Strain Fitness in Agrobacterium fabrum C58 around Atu5075

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5074 and Atu5075 are separated by 60 nucleotidesAtu5075 and Atu5076 are separated by 3 nucleotides Atu5074: Atu5074 - iron alcohol dehydrogenase, at 74,057 to 75,178 Atu5074 Atu5075: Atu5075 - GntR family transcriptional regulator, at 75,239 to 75,943 Atu5075 Atu5076: Atu5076 - hypothetical protein, at 75,947 to 76,975 Atu5076 Position (kb) 75 76Strain fitness (log2 ratio) -1 0 1 2at 74.244 kb on - strand, within Atu5074at 74.250 kb on + strand, within Atu5074at 74.393 kb on - strand, within Atu5074at 74.402 kb on + strand, within Atu5074at 74.410 kb on - strand, within Atu5074at 74.435 kb on - strand, within Atu5074at 74.558 kb on + strand, within Atu5074at 74.583 kb on - strand, within Atu5074at 74.596 kb on + strand, within Atu5074at 74.635 kb on + strand, within Atu5074at 74.642 kb on - strand, within Atu5074at 74.650 kb on - strand, within Atu5074at 74.693 kb on + strand, within Atu5074at 74.693 kb on + strand, within Atu5074at 74.693 kb on + strand, within Atu5074at 74.729 kb on + strand, within Atu5074at 74.737 kb on - strand, within Atu5074at 74.737 kb on - strand, within Atu5074at 74.762 kb on + strand, within Atu5074at 74.804 kb on - strand, within Atu5074at 74.804 kb on - strand, within Atu5074at 74.804 kb on - strand, within Atu5074at 74.806 kb on + strand, within Atu5074at 74.852 kb on + strand, within Atu5074at 74.860 kb on - strand, within Atu5074at 74.860 kb on - strand, within Atu5074at 74.917 kb on + strand, within Atu5074at 74.967 kb on + strand, within Atu5074at 74.972 kb on + strand, within Atu5074at 74.995 kb on - strand, within Atu5074at 75.084 kb on - strandat 75.086 kb on + strandat 75.180 kb on - strandat 75.183 kb on + strandat 75.183 kb on + strandat 75.204 kb on - strandat 75.204 kb on - strandat 75.322 kb on - strand, within Atu5075at 75.368 kb on + strand, within Atu5075at 75.376 kb on - strand, within Atu5075at 75.392 kb on + strand, within Atu5075at 75.400 kb on - strand, within Atu5075at 75.467 kb on + strand, within Atu5075at 75.469 kb on + strand, within Atu5075at 75.472 kb on + strand, within Atu5075at 75.545 kb on + strand, within Atu5075at 75.574 kb on + strand, within Atu5075at 75.606 kb on - strand, within Atu5075at 75.765 kb on + strand, within Atu5075at 75.771 kb on + strand, within Atu5075at 75.797 kb on + strand, within Atu5075at 75.805 kb on + strand, within Atu5075at 75.812 kb on - strand, within Atu5075at 75.918 kb on - strandat 76.008 kb on - strandat 76.065 kb on - strand, within Atu5076at 76.074 kb on - strand, within Atu5076at 76.090 kb on + strand, within Atu5076at 76.096 kb on + strand, within Atu5076at 76.102 kb on + strand, within Atu5076at 76.102 kb on + strand, within Atu5076at 76.110 kb on - strand, within Atu5076at 76.114 kb on - strand, within Atu5076at 76.139 kb on + strand, within Atu5076at 76.175 kb on + strand, within Atu5076at 76.183 kb on - strand, within Atu5076at 76.221 kb on - strand, within Atu5076at 76.243 kb on + strand, within Atu5076at 76.243 kb on + strand, within Atu5076at 76.258 kb on - strand, within Atu5076at 76.286 kb on - strand, within Atu5076at 76.286 kb on - strand, within Atu5076at 76.286 kb on - strand, within Atu5076at 76.305 kb on + strand, within Atu5076at 76.308 kb on - strand, within Atu5076at 76.323 kb on - strand, within Atu5076at 76.343 kb on - strand, within Atu5076at 76.345 kb on + strand, within Atu5076at 76.462 kb on + strand, within Atu5076at 76.556 kb on - strand, within Atu5076at 76.804 kb on - strand, within Atu5076at 76.813 kb on + strand, within Atu5076at 76.934 kb on + strandat 76.937 kb on - strandat 76.942 kb on - strandat 76.942 kb on - strandat 76.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
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74,244 - Atu5074 0.17 +0.5
74,250 + Atu5074 0.17 -0.1
74,393 - Atu5074 0.30 -0.3
74,402 + Atu5074 0.31 +0.2
74,410 - Atu5074 0.31 -0.3
74,435 - Atu5074 0.34 -0.6
74,558 + Atu5074 0.45 -0.5
74,583 - Atu5074 0.47 -0.0
74,596 + Atu5074 0.48 +0.1
74,635 + Atu5074 0.52 -0.3
74,642 - Atu5074 0.52 -0.4
74,650 - Atu5074 0.53 +0.7
74,693 + Atu5074 0.57 +0.3
74,693 + Atu5074 0.57 -1.1
74,693 + Atu5074 0.57 -0.4
74,729 + Atu5074 0.60 +1.9
74,737 - Atu5074 0.61 -0.4
74,737 - Atu5074 0.61 -0.8
74,762 + Atu5074 0.63 +0.2
74,804 - Atu5074 0.67 -0.3
74,804 - Atu5074 0.67 -1.0
74,804 - Atu5074 0.67 +0.1
74,806 + Atu5074 0.67 +0.1
74,852 + Atu5074 0.71 -0.8
74,860 - Atu5074 0.72 -0.4
74,860 - Atu5074 0.72 +0.2
74,917 + Atu5074 0.77 +0.2
74,967 + Atu5074 0.81 +0.2
74,972 + Atu5074 0.82 -0.1
74,995 - Atu5074 0.84 -0.1
75,084 - -0.3
75,086 + -0.2
75,180 - -0.3
75,183 + -0.5
75,183 + -0.5
75,204 - +0.1
75,204 - -0.0
75,322 - Atu5075 0.12 -0.6
75,368 + Atu5075 0.18 -0.4
75,376 - Atu5075 0.19 +0.2
75,392 + Atu5075 0.22 -0.9
75,400 - Atu5075 0.23 -0.3
75,467 + Atu5075 0.32 -0.1
75,469 + Atu5075 0.33 +0.4
75,472 + Atu5075 0.33 -0.4
75,545 + Atu5075 0.43 -0.4
75,574 + Atu5075 0.48 +0.2
75,606 - Atu5075 0.52 +0.1
75,765 + Atu5075 0.75 -1.2
75,771 + Atu5075 0.75 -0.4
75,797 + Atu5075 0.79 -0.9
75,805 + Atu5075 0.80 -1.5
75,812 - Atu5075 0.81 -0.2
75,918 - -0.2
76,008 - -0.2
76,065 - Atu5076 0.11 +0.0
76,074 - Atu5076 0.12 +0.6
76,090 + Atu5076 0.14 +0.4
76,096 + Atu5076 0.14 +0.4
76,102 + Atu5076 0.15 -0.1
76,102 + Atu5076 0.15 -0.6
76,110 - Atu5076 0.16 -0.3
76,114 - Atu5076 0.16 -0.2
76,139 + Atu5076 0.19 +0.3
76,175 + Atu5076 0.22 +0.2
76,183 - Atu5076 0.23 +0.5
76,221 - Atu5076 0.27 -0.2
76,243 + Atu5076 0.29 -0.0
76,243 + Atu5076 0.29 +0.3
76,258 - Atu5076 0.30 -0.1
76,286 - Atu5076 0.33 +0.4
76,286 - Atu5076 0.33 +0.2
76,286 - Atu5076 0.33 +0.5
76,305 + Atu5076 0.35 +0.2
76,308 - Atu5076 0.35 +0.3
76,323 - Atu5076 0.37 -0.5
76,343 - Atu5076 0.38 -0.1
76,345 + Atu5076 0.39 +0.1
76,462 + Atu5076 0.50 -0.1
76,556 - Atu5076 0.59 +0.2
76,804 - Atu5076 0.83 +0.3
76,813 + Atu5076 0.84 +0.1
76,934 + -0.1
76,937 - +1.0
76,942 - +0.8
76,942 - -0.1
76,942 - -0.4

Or see this region's nucleotide sequence