Strain Fitness in Agrobacterium fabrum C58 around Atu4778

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,947,261	-				+0.6
1,947,272	+				+0.3
1,947,272	+				+0.3
1,947,272	+				+0.6
1,947,272	+				+0.4
1,947,272	+				-1.1
1,947,272	+				-0.1
1,947,272	+				+0.1
1,947,272	+				-0.9
1,947,280	-				-1.5
1,947,280	-				-0.0
1,947,374	-				+0.3
1,947,374	-				-0.3
1,947,398	+				-0.6
1,947,423	+				+0.1
1,947,518	+				+0.0
1,947,530	+				-1.3
1,947,537	+				-0.1
1,947,561	-				-0.4
1,947,673	-		Atu4777	0.14	+0.2
1,947,690	-		Atu4777	0.17	-0.5
1,947,838	+		Atu4777	0.45	-0.3
1,947,906	-		Atu4777	0.59	-0.1
1,947,906	-		Atu4777	0.59	+0.2
1,947,943	+		Atu4777	0.66	+0.3
1,947,950	-		Atu4777	0.67	-0.8
1,947,984	+		Atu4777	0.74	-0.4
1,947,984	+		Atu4777	0.74	+0.0
1,948,009	+		Atu4777	0.78	-1.7
1,948,038	+		Atu4777	0.84	+0.4
1,948,076	-				-0.3
1,948,083	+				-0.1
1,948,217	+				+0.6
1,948,337	-		Atu4778	0.20	-1.0
1,948,377	+		Atu4778	0.24	-0.8
1,948,392	-		Atu4778	0.26	-0.3
1,948,392	-		Atu4778	0.26	-0.4
1,948,443	-		Atu4778	0.31	+0.1
1,948,468	+		Atu4778	0.33	+0.0
1,948,519	+		Atu4778	0.39	-0.7
1,948,640	+		Atu4778	0.51	-0.2
1,948,640	+		Atu4778	0.51	-0.4
1,948,648	-		Atu4778	0.52	-0.8
1,948,649	+		Atu4778	0.52	+0.3
1,948,740	+		Atu4778	0.61	-0.7
1,948,740	+		Atu4778	0.61	+0.2
1,948,748	-		Atu4778	0.62	+0.6
1,948,800	-		Atu4778	0.67	-1.0
1,948,830	+		Atu4778	0.70	+0.2
1,948,850	+		Atu4778	0.72	-0.5
1,948,886	+		Atu4778	0.76	-1.1
1,948,886	+		Atu4778	0.76	+0.3
1,948,894	-		Atu4778	0.77	+0.3
1,948,894	-		Atu4778	0.77	+0.7
1,948,895	-		Atu4778	0.77	-0.0
1,948,895	-		Atu4778	0.77	+0.4
1,948,906	-		Atu4778	0.78	-0.1
1,948,912	+		Atu4778	0.79	-2.4
1,948,913	+		Atu4778	0.79	+0.7
1,948,930	-		Atu4778	0.81	-1.1
1,949,037	+				-1.2
1,949,089	+				+0.7
1,949,097	+				-0.9
1,949,122	-				+0.1
1,949,122	-				+0.0
1,949,133	+				+0.2
1,949,191	+				-1.5
1,949,218	-				+0.2
1,949,259	-		Atu4779	0.17	-0.5
1,949,359	-		Atu4779	0.42	-1.1
1,949,390	-		Atu4779	0.49	+0.1
1,949,407	+		Atu4779	0.54	+0.4
1,949,512	+		Atu4779	0.80	-0.4
1,949,621	+				+0.1
1,949,623	+				-0.2
1,949,704	+				-0.0
1,949,756	-				-0.4
1,949,788	-				-0.4
1,949,798	-				-0.7
1,949,837	-		Atu4780	0.12	+0.4
1,949,877	+		Atu4780	0.16	+0.1
1,949,948	+		Atu4780	0.22	-1.0
1,950,089	+		Atu4780	0.35	+0.6
1,950,103	-		Atu4780	0.36	+0.2
1,950,105	+		Atu4780	0.36	-0.1
1,950,110	+		Atu4780	0.37	-0.9