Strain Fitness in Agrobacterium fabrum C58 around Atu4259

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,383,880	-		Atu4258	0.12	+2.0
1,383,902	-		Atu4258	0.15	-0.6
1,383,937	+		Atu4258	0.18	+0.0
1,383,976	-		Atu4258	0.23	+0.1
1,384,031	-		Atu4258	0.28	-0.2
1,384,054	-		Atu4258	0.31	-1.3
1,384,061	-		Atu4258	0.32	-0.1
1,384,061	-		Atu4258	0.32	+0.6
1,384,062	-		Atu4258	0.32	-0.2
1,384,069	-		Atu4258	0.33	-0.1
1,384,069	-		Atu4258	0.33	-1.0
1,384,082	-		Atu4258	0.34	+0.2
1,384,101	-		Atu4258	0.36	-0.2
1,384,247	-		Atu4258	0.52	-0.7
1,384,263	+		Atu4258	0.54	-0.2
1,384,370	-		Atu4258	0.65	+0.2
1,384,407	+		Atu4258	0.69	+0.1
1,384,407	+		Atu4258	0.69	+0.0
1,384,415	-		Atu4258	0.70	-0.2
1,384,415	-		Atu4258	0.70	-0.1
1,384,415	-		Atu4258	0.70	-0.0
1,384,415	-		Atu4258	0.70	-0.1
1,384,435	+		Atu4258	0.72	+0.1
1,384,438	+		Atu4258	0.73	+0.7
1,384,438	+		Atu4258	0.73	-0.0
1,384,438	+		Atu4258	0.73	-0.5
1,384,446	-		Atu4258	0.73	-0.7
1,384,493	+		Atu4258	0.78	-0.4
1,384,577	+		Atu4258	0.88	+0.3
1,384,609	-				-1.0
1,384,684	-				-0.3
1,384,684	-				-0.2
1,384,684	-				+0.1
1,384,723	+				+0.1
1,384,804	+				-0.3
1,384,804	+				-0.1
1,384,804	+				-0.0
1,384,812	-				+0.1
1,384,812	-				-0.2
1,384,815	+				-0.2
1,384,898	-				-0.1
1,384,923	-		Atu4259	0.11	-0.7
1,384,938	-		Atu4259	0.12	+0.1
1,384,961	-		Atu4259	0.13	+0.0
1,385,084	+		Atu4259	0.21	-1.0
1,385,084	+		Atu4259	0.21	-1.5
1,385,092	-		Atu4259	0.22	-0.3
1,385,092	-		Atu4259	0.22	-0.2
1,385,092	-		Atu4259	0.22	-0.1
1,385,337	+		Atu4259	0.37	+0.0
1,385,337	-		Atu4259	0.37	-0.2
1,385,345	-		Atu4259	0.38	-0.3
1,385,354	+		Atu4259	0.38	-0.4
1,385,362	-		Atu4259	0.39	+0.2
1,385,365	+		Atu4259	0.39	+0.2
1,385,388	-		Atu4259	0.40	-0.3
1,385,479	+		Atu4259	0.46	-1.2
1,385,479	+		Atu4259	0.46	-0.5
1,385,487	-		Atu4259	0.46	+0.7
1,385,532	-		Atu4259	0.49	-1.0
1,385,634	+		Atu4259	0.56	-1.3
1,385,676	-		Atu4259	0.58	-0.5
1,385,727	+		Atu4259	0.61	+0.0
1,385,737	-		Atu4259	0.62	-1.8
1,385,839	-		Atu4259	0.68	+0.6
1,385,896	+		Atu4259	0.72	-0.9
1,385,899	-		Atu4259	0.72	-0.3
1,385,934	-		Atu4259	0.74	-0.4
1,385,983	+		Atu4259	0.78	-1.2
1,385,991	-		Atu4259	0.78	-0.5
1,385,991	-		Atu4259	0.78	-0.4
1,385,991	-		Atu4259	0.78	-0.1
1,386,104	+		Atu4259	0.85	-0.4
1,386,191	-				+0.4
1,386,306	+				-0.1
1,386,308	+				-0.9
1,386,314	-				+0.3
1,386,314	-				-0.1
1,386,319	-				+0.6
1,386,331	-				-1.4
1,386,439	-				-0.9
1,386,439	-				+0.5
1,386,456	-				-0.2
1,386,456	-				-0.5
1,386,507	+				-0.1
1,386,522	-				+0.6
1,386,552	+				+0.3
1,386,560	-				+0.6
1,386,560	-				+0.6
1,386,624	+				+0.1
1,386,766	+		Atu4260	0.18	+0.2
1,386,792	-		Atu4260	0.21	+0.2
1,386,792	-		Atu4260	0.21	-0.3
1,386,848	+		Atu4260	0.28	+0.6
1,386,856	-		Atu4260	0.29	+0.6
1,386,909	+		Atu4260	0.36	-0.6
1,386,914	+		Atu4260	0.37	+1.2
1,386,917	-		Atu4260	0.37	-0.5
1,386,943	+		Atu4260	0.41	-0.7
1,386,956	+		Atu4260	0.42	-1.0
1,386,988	+		Atu4260	0.46	-0.1
1,386,996	-		Atu4260	0.47	+0.2
1,387,030	-		Atu4260	0.52	-0.3
1,387,052	+		Atu4260	0.55	-0.0
1,387,094	+		Atu4260	0.60	-0.1
1,387,094	+		Atu4260	0.60	-1.3
1,387,121	+		Atu4260	0.64	+0.2
1,387,200	+		Atu4260	0.74	-1.1
1,387,200	+		Atu4260	0.74	+0.5
1,387,203	-		Atu4260	0.74	-0.8
1,387,208	-		Atu4260	0.75	-0.2
1,387,237	+		Atu4260	0.79	+0.3
1,387,284	+		Atu4260	0.85	+0.4
1,387,284	+		Atu4260	0.85	-1.6
1,387,292	-		Atu4260	0.86	-0.1
1,387,292	-		Atu4260	0.86	-0.2
1,387,292	-		Atu4260	0.86	-2.2
1,387,305	-		Atu4260	0.87	-0.9