Strain Fitness in Agrobacterium fabrum C58 around Atu1778

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,761,578	+		Atu1776	0.86	+1.3
1,761,668	+				-0.8
1,761,715	-				+0.0
1,761,772	-				-0.1
1,761,850	+		Atu1777	0.28	-1.6
1,761,871	-		Atu1777	0.34	+0.0
1,761,926	-		Atu1777	0.50	-0.5
1,761,968	-		Atu1777	0.62	-0.8
1,762,135	-				-0.6
1,762,146	+				+0.0
1,762,184	-				-0.4
1,762,205	+				-0.3
1,762,221	+				+0.1
1,762,274	+		Atu8020	0.27	-0.1
1,762,282	-		Atu8020	0.30	-1.7
1,762,435	+		Atu8020	0.85	-0.3
1,762,443	-		Atu8020	0.88	-0.2
1,762,522	+				-0.5
1,762,587	+				-0.3
1,762,702	+				-1.4
1,762,761	-				-0.2
1,762,775	-				+1.6
1,762,885	-		Atu1778	0.11	+0.1
1,762,958	+		Atu1778	0.13	-0.7
1,763,108	-		Atu1778	0.18	-0.7
1,763,108	-		Atu1778	0.18	-0.2
1,763,137	+		Atu1778	0.18	-1.1
1,763,181	-		Atu1778	0.20	-0.8
1,763,195	+		Atu1778	0.20	-2.3
1,763,203	-		Atu1778	0.20	-1.4
1,763,203	-		Atu1778	0.20	-0.6
1,763,247	-		Atu1778	0.22	-0.3
1,763,274	+		Atu1778	0.22	+0.7
1,763,282	-		Atu1778	0.23	+0.4
1,763,285	+		Atu1778	0.23	-1.4
1,763,337	-		Atu1778	0.24	-1.7
1,763,459	-		Atu1778	0.28	-0.8
1,763,499	-		Atu1778	0.29	-0.0
1,763,514	-		Atu1778	0.29	-0.7
1,763,569	-		Atu1778	0.31	+0.2
1,763,639	+		Atu1778	0.33	-0.4
1,763,639	+		Atu1778	0.33	-0.1
1,763,775	+		Atu1778	0.37	+0.8
1,763,785	+		Atu1778	0.37	-0.0
1,763,795	+		Atu1778	0.37	-0.8
1,763,861	-		Atu1778	0.39	-0.9
1,763,869	-		Atu1778	0.39	-0.2
1,763,869	-		Atu1778	0.39	-2.7
1,763,971	+		Atu1778	0.42	-0.7
1,764,030	-		Atu1778	0.44	-0.3
1,764,058	+		Atu1778	0.45	-1.0
1,764,117	-		Atu1778	0.46	+1.1
1,764,263	+		Atu1778	0.51	+0.2
1,764,388	+		Atu1778	0.54	-0.4
1,764,388	+		Atu1778	0.54	-1.1
1,764,398	+		Atu1778	0.54	-0.3
1,764,398	+		Atu1778	0.54	-1.6
1,764,406	-		Atu1778	0.55	-0.6
1,764,435	+		Atu1778	0.55	-0.3
1,764,490	+		Atu1778	0.57	+0.1
1,764,507	-		Atu1778	0.58	-0.7
1,764,571	+		Atu1778	0.59	+0.2
1,764,627	+		Atu1778	0.61	-0.6
1,764,691	+		Atu1778	0.63	+0.4
1,764,701	+		Atu1778	0.63	-1.1
1,764,709	-		Atu1778	0.63	-1.1
1,764,771	-		Atu1778	0.65	-2.7
1,764,775	+		Atu1778	0.65	+0.1
1,764,782	+		Atu1778	0.65	-2.9
1,764,794	+		Atu1778	0.66	-0.6
1,764,871	-		Atu1778	0.68	-1.1
1,764,871	-		Atu1778	0.68	-0.3
1,764,871	-		Atu1778	0.68	-0.1
1,764,916	+		Atu1778	0.69	+0.3
1,765,026	-		Atu1778	0.72	-0.3
1,765,039	+		Atu1778	0.73	+0.3
1,765,171	+		Atu1778	0.77	-0.8
1,765,198	+		Atu1778	0.77	-0.7
1,765,240	+		Atu1778	0.79	-0.8
1,765,248	-		Atu1778	0.79	-2.0
1,765,333	-		Atu1778	0.81	-0.1
1,765,357	-		Atu1778	0.82	-0.6
1,765,357	-		Atu1778	0.82	+2.1
1,765,372	+		Atu1778	0.82	+1.8
1,765,391	+		Atu1778	0.83	-0.9
1,765,469	+		Atu1778	0.85	+0.2
1,765,618	-		Atu1778	0.89	-1.8
1,765,763	-				-1.0
1,765,795	+				+0.6
1,765,826	+				-0.7
1,765,861	+				-0.3
1,766,035	+		Atu1779	0.13	-1.0
1,766,316	-				+0.0
1,766,323	-				+0.3
1,766,337	-				+0.5
1,766,466	+				-0.6
1,766,524	+				+0.7
1,766,539	-				-0.1
1,766,544	-				-1.0
1,766,600	-				-1.2
1,766,638	+				-0.3
1,766,950	+		Atu1780	0.22	-0.3
1,766,958	-		Atu1780	0.22	+0.1