Strain Fitness in Agrobacterium fabrum C58 around Atu1424

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,419,703	+				+0.6
1,419,734	+				+1.0
1,419,742	-				-1.2
1,419,742	-				+0.4
1,419,743	+				+0.6
1,419,850	+		Atu1423	0.14	-0.7
1,419,938	+		Atu1423	0.24	+0.7
1,420,197	+		Atu1423	0.53	-0.4
1,420,205	-		Atu1423	0.54	+0.0
1,420,249	+		Atu1423	0.59	-0.6
1,420,273	-		Atu1423	0.62	-0.2
1,420,326	-		Atu1423	0.68	-0.5
1,420,402	-		Atu1423	0.76	+1.0
1,420,420	+		Atu1423	0.78	+0.5
1,420,445	+		Atu1423	0.81	+0.4
1,420,445	+		Atu1423	0.81	-0.5
1,420,450	+		Atu1423	0.82	+0.0
1,420,489	-		Atu1423	0.86	-0.6
1,420,573	+				+0.0
1,420,578	+				-0.5
1,421,448	+				+0.4
1,421,448	+				+1.4
1,421,456	-				+0.1
1,421,456	-				+0.0
1,421,456	-				+0.3
1,421,456	-				+0.5
1,421,456	-				-0.2
1,421,456	-				+1.1
1,422,371	+		Atu1426	0.61	-0.8