Strain Fitness in Agrobacterium fabrum C58 around Atu1411

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,404,015	-		Atu1409	0.74	+1.3
1,404,023	-		Atu1409	0.75	+1.2
1,404,108	-				+0.0
1,404,108	-				+0.7
1,404,163	+				+0.3
1,404,165	+				+0.2
1,404,215	+				-0.0
1,404,234	+				+1.5
1,404,470	+		Atu1410	0.24	-0.4
1,404,470	+		Atu1410	0.24	+1.6
1,404,522	-		Atu1410	0.32	+0.2
1,404,568	-		Atu1410	0.38	-2.0
1,404,715	+		Atu1410	0.58	+0.4
1,404,725	+		Atu1410	0.60	+0.7
1,404,749	-		Atu1410	0.63	+1.7
1,404,778	+		Atu1410	0.67	-0.0
1,404,849	+		Atu1410	0.77	+0.2
1,404,872	+		Atu1410	0.80	+0.6
1,404,948	-				+0.2
1,405,070	+				+0.5
1,405,091	+				+2.6
1,405,134	-				-0.7
1,405,255	+		Atu1411	0.14	+0.0
1,405,266	+		Atu1411	0.14	+0.8
1,405,274	-		Atu1411	0.15	+0.4
1,405,274	-		Atu1411	0.15	-0.1
1,405,274	-		Atu1411	0.15	-0.4
1,405,336	+		Atu1411	0.18	-0.4
1,405,363	+		Atu1411	0.20	+0.1
1,405,450	+		Atu1411	0.25	+0.4
1,405,455	+		Atu1411	0.25	+0.1
1,405,458	-		Atu1411	0.25	+0.1
1,405,463	-		Atu1411	0.25	-0.6
1,405,463	-		Atu1411	0.25	+0.1
1,405,477	+		Atu1411	0.26	+0.4
1,405,485	-		Atu1411	0.27	+0.4
1,405,613	-		Atu1411	0.34	-0.1
1,405,613	-		Atu1411	0.34	+0.4
1,405,613	-		Atu1411	0.34	+0.5
1,405,654	+		Atu1411	0.36	-0.2
1,405,685	+		Atu1411	0.38	+0.4
1,405,753	-		Atu1411	0.42	-0.2
1,405,792	+		Atu1411	0.44	+0.4
1,405,792	+		Atu1411	0.44	-1.3
1,405,874	-		Atu1411	0.49	-2.2
1,405,981	-		Atu1411	0.55	+0.5
1,406,049	+		Atu1411	0.58	+0.8
1,406,168	-		Atu1411	0.65	+0.2
1,406,251	+		Atu1411	0.70	+1.0
1,406,302	-		Atu1411	0.73	+0.0
1,406,326	+		Atu1411	0.74	-0.1
1,406,391	-		Atu1411	0.78	+0.5
1,406,460	-		Atu1411	0.82	+0.0
1,406,556	-		Atu1411	0.87	+0.4
1,406,560	+		Atu1411	0.87	+0.5
1,406,568	-		Atu1411	0.88	-0.3
1,406,584	+		Atu1411	0.89	+0.6
1,406,615	-				+0.4
1,406,646	-				+0.3
1,406,691	+				+0.2
1,406,761	+				+0.1
1,406,797	-				-0.3
1,406,905	+		Atu1412	0.11	+0.2
1,407,003	+		Atu1412	0.21	+0.2
1,407,032	-		Atu1412	0.24	+0.3
1,407,051	+		Atu1412	0.26	+0.7
1,407,189	-		Atu1412	0.39	-0.4
1,407,227	+		Atu1412	0.43	+1.3
1,407,232	+		Atu1412	0.43	-0.6
1,407,235	-		Atu1412	0.43	+0.9
1,407,244	+		Atu1412	0.44	+0.3
1,407,244	+		Atu1412	0.44	-0.5
1,407,252	-		Atu1412	0.45	-0.2
1,407,278	-		Atu1412	0.48	+0.1
1,407,468	-		Atu1412	0.66	-0.2
1,407,523	-		Atu1412	0.71	+0.4
1,407,528	-		Atu1412	0.72	+0.8
1,407,528	-		Atu1412	0.72	+0.4
1,407,534	-		Atu1412	0.72	+1.9
1,407,609	+		Atu1412	0.80	+1.6
1,407,619	+		Atu1412	0.80	+1.1
1,407,633	-		Atu1412	0.82	-0.0
1,407,668	+		Atu1412	0.85	+0.2
1,407,690	+		Atu1412	0.87	+1.2
1,407,749	+				+0.2
1,407,750	-				+0.1
1,407,757	-				+0.1