Strain Fitness in Agrobacterium fabrum C58 around Atu1409

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,402,665	+				-0.3
1,402,779	-		Atu1408	0.16	+0.3
1,402,785	-		Atu1408	0.17	+1.3
1,402,908	-		Atu1408	0.28	-1.6
1,402,927	+		Atu1408	0.30	-0.8
1,402,999	-		Atu1408	0.37	+0.2
1,403,000	-		Atu1408	0.37	-1.3
1,403,019	+		Atu1408	0.39	-0.1
1,403,075	-		Atu1408	0.44	-0.0
1,403,134	-		Atu1408	0.50	+0.3
1,403,215	+		Atu1408	0.58	-0.2
1,403,278	+		Atu1408	0.64	+0.3
1,403,330	+		Atu1408	0.69	+0.1
1,403,466	-		Atu1408	0.82	-0.2
1,403,521	+		Atu1408	0.87	+0.5
1,403,521	+		Atu1408	0.87	-0.3
1,403,524	-		Atu1408	0.87	-0.1
1,403,544	+		Atu1408	0.89	-0.3
1,403,544	+		Atu1408	0.89	+0.1
1,403,545	-		Atu1408	0.89	-0.3
1,403,587	+				+0.5
1,403,617	+				+2.4
1,403,657	-				-0.3
1,403,684	+				+0.4
1,403,707	-		Atu1409	0.11	-0.4
1,403,709	-		Atu1409	0.11	+0.0
1,403,711	+		Atu1409	0.12	+0.4
1,403,791	+		Atu1409	0.28	+0.6
1,403,890	+		Atu1409	0.48	+1.1
1,403,890	+		Atu1409	0.48	-0.2
1,403,898	-		Atu1409	0.50	-0.3
1,403,898	-		Atu1409	0.50	+0.8
1,403,921	+		Atu1409	0.55	+0.4
1,403,970	+		Atu1409	0.65	+0.4
1,404,005	+		Atu1409	0.72	+1.1
1,404,015	-		Atu1409	0.74	+1.3
1,404,023	-		Atu1409	0.75	+1.2
1,404,108	-				+0.1
1,404,108	-				+0.7
1,404,163	+				+0.3
1,404,165	+				+0.2
1,404,215	+				-0.0
1,404,234	+				+1.5
1,404,470	+		Atu1410	0.24	-0.4
1,404,470	+		Atu1410	0.24	+1.6
1,404,522	-		Atu1410	0.32	+0.2
1,404,568	-		Atu1410	0.38	-2.0
1,404,715	+		Atu1410	0.58	+0.4
1,404,725	+		Atu1410	0.60	+0.7
1,404,749	-		Atu1410	0.63	+1.7
1,404,778	+		Atu1410	0.67	-0.0
1,404,849	+		Atu1410	0.77	+0.2
1,404,872	+		Atu1410	0.80	+0.6
1,404,948	-				+0.2
1,405,070	+				+0.5
1,405,091	+				+2.6
1,405,134	-				-0.7