Strain Fitness in Agrobacterium fabrum C58 around Atu1038

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,029,262	-				+0.3
1,029,269	+				-0.8
1,029,493	+		Atu1037	0.22	+0.4
1,029,510	+		Atu1037	0.24	+0.1
1,029,510	+		Atu1037	0.24	+0.8
1,029,510	+		Atu1037	0.24	-0.3
1,029,518	-		Atu1037	0.25	-0.6
1,029,518	-		Atu1037	0.25	+0.2
1,029,518	-		Atu1037	0.25	+0.5
1,029,518	-		Atu1037	0.25	+0.3
1,029,520	+		Atu1037	0.25	+0.0
1,029,624	+		Atu1037	0.39	-0.0
1,029,728	+		Atu1037	0.53	+1.2
1,029,781	-		Atu1037	0.60	-0.6
1,029,806	-		Atu1037	0.63	+0.4
1,029,849	+		Atu1037	0.69	+1.5
1,029,875	+		Atu1037	0.73	-0.2
1,029,890	+		Atu1037	0.75	+0.5
1,029,994	-		Atu1037	0.88	-0.4
1,030,004	-		Atu1037	0.90	-1.0
1,030,016	+				+0.3
1,030,021	+				-0.3
1,030,021	+				-1.3
1,030,029	-				-1.0
1,030,029	-				+0.0
1,030,029	-				+0.8
1,030,029	-				-2.6
1,030,029	-				+0.0
1,030,029	-				+0.3
1,030,061	+				-0.3
1,030,141	-				-0.0
1,030,332	+		Atu1038	0.31	-1.5
1,030,339	-		Atu1038	0.33	-0.2
1,030,353	+		Atu1038	0.36	-1.4
1,030,353	+		Atu1038	0.36	-0.4
1,030,644	+				+0.8
1,030,652	-				-0.1
1,030,783	+		Atu1039	0.17	-0.1
1,030,892	-		Atu1039	0.32	-0.2
1,030,908	+		Atu1039	0.34	-0.5
1,031,083	+		Atu1039	0.57	-1.6
1,031,170	-		Atu1039	0.68	-0.1
1,031,205	-		Atu1039	0.73	-0.2
1,031,466	-				+1.5
1,031,507	-				+0.4
1,031,580	-				+0.8