Strain Fitness in Agrobacterium fabrum C58 around Atu6140

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6139 and Atu6140 are separated by 99 nucleotidesAtu6140 and Atu6141 overlap by 4 nucleotides Atu6139: Atu6139 - ABC transporter, substrate binding protein (agrocinopines A and B), at 158,298 to 159,863 Atu6139 Atu6140: Atu6140 - ABC transporter, nucleotide binding/ATPase protein (agrocinopine), at 159,963 to 160,862 Atu6140 Atu6141: Atu6141 - ABC transporter, nucleotide binding/ATPase protein (agrocinopine), at 160,859 to 161,878 Atu6141 Position (kb) 159 160 161Strain fitness (log2 ratio) -3 -2 -1 0 1at 158.977 kb on + strand, within Atu6139at 158.992 kb on + strand, within Atu6139at 159.012 kb on - strand, within Atu6139at 159.055 kb on - strand, within Atu6139at 159.055 kb on - strand, within Atu6139at 159.070 kb on + strand, within Atu6139at 159.078 kb on - strand, within Atu6139at 159.084 kb on - strand, within Atu6139at 159.163 kb on + strand, within Atu6139at 159.211 kb on + strand, within Atu6139at 159.211 kb on + strand, within Atu6139at 159.219 kb on - strand, within Atu6139at 159.252 kb on + strand, within Atu6139at 159.268 kb on + strand, within Atu6139at 159.268 kb on + strand, within Atu6139at 159.331 kb on - strand, within Atu6139at 159.331 kb on - strand, within Atu6139at 159.331 kb on - strand, within Atu6139at 159.331 kb on - strand, within Atu6139at 159.353 kb on + strand, within Atu6139at 159.366 kb on + strand, within Atu6139at 159.499 kb on - strand, within Atu6139at 159.578 kb on - strand, within Atu6139at 159.583 kb on + strand, within Atu6139at 159.618 kb on + strand, within Atu6139at 159.645 kb on - strand, within Atu6139at 159.682 kb on - strand, within Atu6139at 159.682 kb on - strand, within Atu6139at 159.779 kb on + strandat 159.787 kb on - strandat 159.787 kb on - strandat 159.814 kb on - strandat 159.906 kb on + strandat 159.907 kb on + strandat 159.907 kb on + strandat 159.914 kb on - strandat 159.915 kb on - strandat 159.976 kb on + strandat 159.994 kb on - strandat 160.024 kb on + strandat 160.025 kb on + strandat 160.025 kb on - strandat 160.025 kb on - strandat 160.032 kb on - strandat 160.079 kb on + strand, within Atu6140at 160.125 kb on + strand, within Atu6140at 160.128 kb on - strand, within Atu6140at 160.135 kb on - strand, within Atu6140at 160.137 kb on + strand, within Atu6140at 160.189 kb on - strand, within Atu6140at 160.195 kb on + strand, within Atu6140at 160.195 kb on + strand, within Atu6140at 160.203 kb on - strand, within Atu6140at 160.203 kb on - strand, within Atu6140at 160.203 kb on - strand, within Atu6140at 160.235 kb on - strand, within Atu6140at 160.267 kb on + strand, within Atu6140at 160.277 kb on + strand, within Atu6140at 160.285 kb on - strand, within Atu6140at 160.285 kb on - strand, within Atu6140at 160.295 kb on + strand, within Atu6140at 160.342 kb on + strand, within Atu6140at 160.360 kb on - strand, within Atu6140at 160.430 kb on + strand, within Atu6140at 160.438 kb on - strand, within Atu6140at 160.438 kb on - strand, within Atu6140at 160.503 kb on + strand, within Atu6140at 160.531 kb on + strand, within Atu6140at 160.531 kb on + strand, within Atu6140at 160.624 kb on + strand, within Atu6140at 160.634 kb on + strand, within Atu6140at 160.642 kb on - strand, within Atu6140at 160.684 kb on + strand, within Atu6140at 160.692 kb on - strand, within Atu6140at 160.692 kb on - strand, within Atu6140at 160.692 kb on - strand, within Atu6140at 160.716 kb on + strand, within Atu6140at 160.716 kb on + strand, within Atu6140at 160.761 kb on + strand, within Atu6140at 160.773 kb on - strandat 160.773 kb on - strandat 160.817 kb on - strandat 160.840 kb on + strandat 160.848 kb on - strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.863 kb on - strandat 160.882 kb on - strandat 160.882 kb on - strandat 160.897 kb on + strandat 160.900 kb on - strandat 160.941 kb on + strandat 160.986 kb on + strand, within Atu6141at 161.013 kb on - strand, within Atu6141at 161.029 kb on + strand, within Atu6141at 161.029 kb on + strand, within Atu6141at 161.032 kb on - strand, within Atu6141at 161.037 kb on - strand, within Atu6141at 161.044 kb on - strand, within Atu6141at 161.053 kb on - strand, within Atu6141at 161.080 kb on - strand, within Atu6141at 161.108 kb on + strand, within Atu6141at 161.116 kb on - strand, within Atu6141at 161.226 kb on + strand, within Atu6141at 161.236 kb on - strand, within Atu6141at 161.277 kb on + strand, within Atu6141at 161.315 kb on - strand, within Atu6141at 161.323 kb on - strand, within Atu6141at 161.406 kb on - strand, within Atu6141at 161.501 kb on - strand, within Atu6141at 161.582 kb on + strand, within Atu6141at 161.603 kb on + strand, within Atu6141at 161.603 kb on + strand, within Atu6141at 161.603 kb on + strand, within Atu6141at 161.603 kb on + strand, within Atu6141at 161.603 kb on + strand, within Atu6141at 161.603 kb on + strand, within Atu6141at 161.611 kb on - strand, within Atu6141at 161.611 kb on - strand, within Atu6141at 161.611 kb on - strand, within Atu6141at 161.611 kb on - strand, within Atu6141at 161.618 kb on + strand, within Atu6141at 161.628 kb on - strand, within Atu6141at 161.632 kb on - strand, within Atu6141at 161.637 kb on + strand, within Atu6141at 161.649 kb on - strand, within Atu6141at 161.658 kb on + strand, within Atu6141at 161.698 kb on + strand, within Atu6141at 161.706 kb on - strand, within Atu6141at 161.706 kb on - strand, within Atu6141at 161.808 kb on - strandat 161.808 kb on - strandat 161.810 kb on + strandat 161.847 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
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158,977 + Atu6139 0.43 -0.9
158,992 + Atu6139 0.44 -1.9
159,012 - Atu6139 0.46 -1.1
159,055 - Atu6139 0.48 -0.4
159,055 - Atu6139 0.48 -0.0
159,070 + Atu6139 0.49 -0.8
159,078 - Atu6139 0.50 -0.8
159,084 - Atu6139 0.50 -1.5
159,163 + Atu6139 0.55 -3.1
159,211 + Atu6139 0.58 -1.3
159,211 + Atu6139 0.58 -1.0
159,219 - Atu6139 0.59 -1.4
159,252 + Atu6139 0.61 -1.9
159,268 + Atu6139 0.62 -1.2
159,268 + Atu6139 0.62 -1.2
159,331 - Atu6139 0.66 -1.3
159,331 - Atu6139 0.66 -0.9
159,331 - Atu6139 0.66 -0.3
159,331 - Atu6139 0.66 -1.3
159,353 + Atu6139 0.67 -2.3
159,366 + Atu6139 0.68 -0.3
159,499 - Atu6139 0.77 -0.4
159,578 - Atu6139 0.82 -1.4
159,583 + Atu6139 0.82 -1.1
159,618 + Atu6139 0.84 -2.1
159,645 - Atu6139 0.86 -2.0
159,682 - Atu6139 0.88 -1.3
159,682 - Atu6139 0.88 -1.2
159,779 + -1.7
159,787 - -1.2
159,787 - -0.4
159,814 - -1.7
159,906 + -0.6
159,907 + -0.1
159,907 + +0.3
159,914 - -0.9
159,915 - -1.1
159,976 + +1.3
159,994 - -1.2
160,024 + -0.7
160,025 + -3.0
160,025 - -1.3
160,025 - +0.3
160,032 - -0.0
160,079 + Atu6140 0.13 -0.9
160,125 + Atu6140 0.18 -1.3
160,128 - Atu6140 0.18 -1.9
160,135 - Atu6140 0.19 -1.2
160,137 + Atu6140 0.19 -0.8
160,189 - Atu6140 0.25 -1.5
160,195 + Atu6140 0.26 -1.7
160,195 + Atu6140 0.26 +0.0
160,203 - Atu6140 0.27 -1.5
160,203 - Atu6140 0.27 -1.3
160,203 - Atu6140 0.27 -1.8
160,235 - Atu6140 0.30 -1.7
160,267 + Atu6140 0.34 +1.6
160,277 + Atu6140 0.35 -1.8
160,285 - Atu6140 0.36 -1.5
160,285 - Atu6140 0.36 -1.9
160,295 + Atu6140 0.37 -1.4
160,342 + Atu6140 0.42 -1.2
160,360 - Atu6140 0.44 -0.7
160,430 + Atu6140 0.52 -1.3
160,438 - Atu6140 0.53 +0.1
160,438 - Atu6140 0.53 -0.6
160,503 + Atu6140 0.60 -1.2
160,531 + Atu6140 0.63 -1.0
160,531 + Atu6140 0.63 -0.5
160,624 + Atu6140 0.73 -1.4
160,634 + Atu6140 0.75 +0.2
160,642 - Atu6140 0.75 -1.3
160,684 + Atu6140 0.80 -1.7
160,692 - Atu6140 0.81 -1.2
160,692 - Atu6140 0.81 -1.2
160,692 - Atu6140 0.81 -1.4
160,716 + Atu6140 0.84 -0.1
160,716 + Atu6140 0.84 -1.9
160,761 + Atu6140 0.89 -1.3
160,773 - -0.9
160,773 - -0.8
160,817 - -1.7
160,840 + -0.0
160,848 - -0.4
160,855 + -1.8
160,855 + -1.0
160,855 + +0.1
160,855 + -1.0
160,855 + -0.4
160,855 + -1.6
160,863 - -1.5
160,882 - -1.1
160,882 - -1.0
160,897 + +0.3
160,900 - -0.8
160,941 + -0.8
160,986 + Atu6141 0.12 -1.3
161,013 - Atu6141 0.15 -0.8
161,029 + Atu6141 0.17 -0.9
161,029 + Atu6141 0.17 -0.6
161,032 - Atu6141 0.17 -1.0
161,037 - Atu6141 0.17 -2.1
161,044 - Atu6141 0.18 -1.6
161,053 - Atu6141 0.19 -1.5
161,080 - Atu6141 0.22 -0.1
161,108 + Atu6141 0.24 -1.3
161,116 - Atu6141 0.25 -1.3
161,226 + Atu6141 0.36 -2.1
161,236 - Atu6141 0.37 -0.8
161,277 + Atu6141 0.41 -1.4
161,315 - Atu6141 0.45 -0.5
161,323 - Atu6141 0.45 -1.4
161,406 - Atu6141 0.54 -0.3
161,501 - Atu6141 0.63 -1.3
161,582 + Atu6141 0.71 -1.0
161,603 + Atu6141 0.73 -0.4
161,603 + Atu6141 0.73 -1.4
161,603 + Atu6141 0.73 -2.5
161,603 + Atu6141 0.73 +0.6
161,603 + Atu6141 0.73 -0.4
161,603 + Atu6141 0.73 -0.0
161,611 - Atu6141 0.74 -1.3
161,611 - Atu6141 0.74 -1.3
161,611 - Atu6141 0.74 -1.2
161,611 - Atu6141 0.74 -1.6
161,618 + Atu6141 0.74 -1.8
161,628 - Atu6141 0.75 -1.9
161,632 - Atu6141 0.76 -0.6
161,637 + Atu6141 0.76 -1.5
161,649 - Atu6141 0.77 -1.3
161,658 + Atu6141 0.78 -1.6
161,698 + Atu6141 0.82 -0.0
161,706 - Atu6141 0.83 -0.7
161,706 - Atu6141 0.83 -0.6
161,808 - -1.7
161,808 - -1.4
161,810 + +0.6
161,847 + -2.0

Or see this region's nucleotide sequence