Strain Fitness in Agrobacterium fabrum C58 around Atu6093

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
110,471	+		Atu6092	0.30	+0.1
110,471	+		Atu6092	0.30	-1.6
110,500	-		Atu6092	0.32	-1.5
110,540	-		Atu6092	0.35	+0.5
110,560	+		Atu6092	0.36	+0.1
110,587	-		Atu6092	0.38	+0.9
110,667	+		Atu6092	0.44	-0.2
110,717	+		Atu6092	0.47	+0.1
110,717	+		Atu6092	0.47	-1.0
110,779	-		Atu6092	0.52	-1.3
110,779	-		Atu6092	0.52	+0.1
110,784	+		Atu6092	0.52	+0.3
110,784	+		Atu6092	0.52	-0.6
110,799	+		Atu6092	0.53	+0.8
110,804	+		Atu6092	0.53	+0.8
110,821	+		Atu6092	0.54	-0.5
110,835	+		Atu6092	0.55	-0.1
110,901	-		Atu6092	0.60	-0.0
111,004	+		Atu6092	0.67	-0.3
111,068	+		Atu6092	0.72	+0.3
111,108	+		Atu6092	0.75	+0.5
111,157	+		Atu6092	0.78	+0.1
111,195	+		Atu6092	0.81	+0.1
111,200	+		Atu6092	0.81	+0.3
111,203	-		Atu6092	0.81	+0.2
111,203	-		Atu6092	0.81	+0.2
111,213	-		Atu6092	0.82	-0.9
111,320	-		Atu6092	0.90	+0.4
111,342	-				+0.2
111,368	+				-0.3
111,384	+				-0.5
111,385	+				-0.5
111,473	-				+0.2
111,503	-				-1.4
111,542	-				-0.4
111,557	+				+0.1
111,634	+				-1.6
111,634	+				+0.5
111,634	+				+0.1
111,642	-				+0.1
111,690	+				-0.3
111,693	-				+0.0
111,698	-				-0.5
111,701	-				-0.2
111,716	+				+0.1
111,780	+				+0.4
111,781	-				+0.5
111,785	-				-0.1
111,865	-		Atu6093	0.12	-0.5
111,912	-		Atu6093	0.14	+0.8
111,975	+		Atu6093	0.16	-0.5
111,975	+		Atu6093	0.16	+0.4
111,975	+		Atu6093	0.16	+1.8
111,975	+		Atu6093	0.16	+0.0
111,975	+		Atu6093	0.16	+1.0
111,975	+		Atu6093	0.16	+0.2
111,983	-		Atu6093	0.16	+0.3
112,257	+		Atu6093	0.24	-0.1
112,265	-		Atu6093	0.25	-0.3
112,265	-		Atu6093	0.25	-0.3
112,299	+		Atu6093	0.26	+0.5
112,324	-		Atu6093	0.26	+0.5
112,361	+		Atu6093	0.28	+0.2
112,371	+		Atu6093	0.28	-0.4
112,379	-		Atu6093	0.28	+0.1
112,468	+		Atu6093	0.31	+0.3
112,493	-		Atu6093	0.32	+0.2
112,516	-		Atu6093	0.32	+0.7
112,644	-		Atu6093	0.36	+0.7
112,667	+		Atu6093	0.37	+1.1
112,717	+		Atu6093	0.38	+1.4
112,772	+		Atu6093	0.40	-1.7
112,777	+		Atu6093	0.40	+1.3
112,780	-		Atu6093	0.40	+0.0
112,832	+		Atu6093	0.42	+0.4
112,843	+		Atu6093	0.42	+0.6
112,863	+		Atu6093	0.43	-0.2
112,916	+		Atu6093	0.45	-0.3
112,994	-		Atu6093	0.47	+1.2
113,067	-		Atu6093	0.49	+0.3
113,067	-		Atu6093	0.49	+1.4
113,071	+		Atu6093	0.49	+0.4
113,071	+		Atu6093	0.49	-0.6
113,074	-		Atu6093	0.49	+0.3
113,117	-		Atu6093	0.51	+0.0
113,183	-		Atu6093	0.53	+0.4
113,233	+		Atu6093	0.54	-0.5
113,292	+		Atu6093	0.56	+0.4
113,294	-		Atu6093	0.56	+0.1
113,421	+		Atu6093	0.60	-0.3
113,421	+		Atu6093	0.60	+0.4
113,429	-		Atu6093	0.60	-0.2
113,477	+		Atu6093	0.62	+0.2
113,505	+		Atu6093	0.63	-0.2
113,587	+		Atu6093	0.65	+0.1
113,635	+		Atu6093	0.67	+0.5
113,656	-		Atu6093	0.67	+0.4
113,682	+		Atu6093	0.68	+0.5
113,770	-		Atu6093	0.71	+0.3
113,791	-		Atu6093	0.71	-0.5
113,797	+		Atu6093	0.72	+0.7
113,797	+		Atu6093	0.72	-0.3
113,797	+		Atu6093	0.72	+0.3
113,805	-		Atu6093	0.72	+0.7
113,805	-		Atu6093	0.72	-0.2
113,863	-		Atu6093	0.74	-0.1
113,917	+		Atu6093	0.75	-0.5
113,983	-		Atu6093	0.77	-0.1
114,110	-		Atu6093	0.81	+1.2
114,161	-		Atu6093	0.83	-0.7
114,164	+		Atu6093	0.83	+0.4
114,256	+		Atu6093	0.86	-0.2
114,256	+		Atu6093	0.86	-0.7
114,257	-		Atu6093	0.86	-0.6
114,264	-		Atu6093	0.86	+1.4
114,266	+		Atu6093	0.86	-0.1
114,293	+		Atu6093	0.87	+1.2
114,300	+		Atu6093	0.87	+0.3
114,314	+		Atu6093	0.87	+0.4
114,322	-		Atu6093	0.88	-0.3
114,322	-		Atu6093	0.88	-0.2
114,345	+		Atu6093	0.88	+0.1
114,383	-		Atu6093	0.89	+0.1
114,397	+		Atu6093	0.90	+0.1
114,407	+				+1.0
114,441	+				+0.0
114,553	-				-0.2
114,589	+				+0.1
114,595	-				-0.1
114,597	-				+0.6
114,620	+				+0.2
114,633	+				-0.2
114,646	-				-0.5
114,647	-				+1.0
114,649	+				+0.6
114,658	-				-0.4
114,688	-				+0.3
114,689	-				-0.4
114,738	-				-1.1
114,873	+				-1.2
114,876	-				+0.6
114,942	+				-1.0
114,950	-				-0.0
114,950	-				-0.5
114,950	-				-0.3
114,950	-				-0.6
114,957	+				-0.5
115,109	-		Atu6094	0.13	-1.8
115,245	+		Atu6094	0.25	-0.1
115,300	+		Atu6094	0.30	-0.8
115,326	-		Atu6094	0.33	+2.6
115,330	+		Atu6094	0.33	-0.4
115,431	-		Atu6094	0.42	-0.4
115,498	+		Atu6094	0.48	-0.3
115,500	-		Atu6094	0.48	-0.2
115,511	-		Atu6094	0.49	-0.1
115,524	-		Atu6094	0.50	-0.2
115,562	-		Atu6094	0.54	+0.1
115,583	+		Atu6094	0.56	-0.1
115,591	+		Atu6094	0.56	+0.9
115,633	+		Atu6094	0.60	-0.4
115,641	-		Atu6094	0.61	+0.3
115,657	-		Atu6094	0.62	-0.3
115,659	-		Atu6094	0.62	-0.4
115,666	+		Atu6094	0.63	-0.5
115,674	-		Atu6094	0.64	-0.5
115,685	+		Atu6094	0.65	-0.4
115,690	+		Atu6094	0.65	+1.5