Strain Fitness in Agrobacterium fabrum C58 around Atu5082

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
81,770	-				+0.5
81,808	+				-0.6
81,816	-				-0.0
81,820	+				+0.0
81,820	+				+0.1
81,820	+				-0.8
81,828	-				-0.4
81,839	+				-0.0
81,867	+				-1.1
81,875	-				+0.2
81,949	-		Atu5081	0.10	-0.8
82,114	+		Atu5081	0.29	+0.6
82,127	-		Atu5081	0.31	-0.2
82,212	-		Atu5081	0.40	-0.4
82,272	-		Atu5081	0.47	-2.0
82,326	+		Atu5081	0.53	-1.1
82,326	+		Atu5081	0.53	+0.8
82,380	+		Atu5081	0.59	-0.9
82,452	+		Atu5081	0.68	-1.6
82,452	+		Atu5081	0.68	-0.0
82,460	-		Atu5081	0.68	-0.1
82,460	-		Atu5081	0.68	-0.4
82,475	-		Atu5081	0.70	-0.3
82,557	+		Atu5081	0.80	+0.1
82,565	-		Atu5081	0.80	-0.6
82,565	-		Atu5081	0.80	-0.2
82,575	+		Atu5081	0.82	-0.2
82,591	-		Atu5081	0.83	+0.3
82,651	+				-1.6
82,669	+				-0.4
82,669	+				-0.5
82,669	+				+0.3
82,677	-				+0.1
82,719	-				+0.1
82,733	-				-0.6
82,792	-				-0.5
82,801	-				-1.9
82,815	-				+0.2
82,874	-				-0.2
82,874	-				+0.3
82,927	-				-0.7
82,950	-		Atu5082	0.10	-0.2
83,021	-		Atu5082	0.15	+0.1
83,070	-		Atu5082	0.17	-0.0
83,116	+		Atu5082	0.20	-2.2
83,124	-		Atu5082	0.20	+1.0
83,239	-		Atu5082	0.27	+0.8
83,332	-		Atu5082	0.32	-0.2
83,334	+		Atu5082	0.32	-0.3
83,396	-		Atu5082	0.36	+0.2
83,396	-		Atu5082	0.36	-0.6
83,396	-		Atu5082	0.36	+0.4
83,396	-		Atu5082	0.36	-0.1
83,396	-		Atu5082	0.36	+0.3
83,396	-		Atu5082	0.36	+0.2
83,396	-		Atu5082	0.36	-1.1
83,418	-		Atu5082	0.37	-0.7
83,421	-		Atu5082	0.37	-0.1
83,423	+		Atu5082	0.37	+0.2
83,423	+		Atu5082	0.37	-1.7
83,426	-		Atu5082	0.37	-0.0
83,431	-		Atu5082	0.38	-0.4
83,431	-		Atu5082	0.38	-0.4
83,431	-		Atu5082	0.38	-0.5
83,431	-		Atu5082	0.38	-0.7
83,431	-		Atu5082	0.38	-0.2
83,431	-		Atu5082	0.38	+1.1
83,431	-		Atu5082	0.38	+0.2
83,431	-		Atu5082	0.38	-0.7
83,566	-		Atu5082	0.45	-1.2
83,580	+		Atu5082	0.46	-0.9
83,602	-		Atu5082	0.47	-0.7
83,602	-		Atu5082	0.47	-0.0
83,682	-		Atu5082	0.52	-0.1
83,695	+		Atu5082	0.53	-0.2
83,720	-		Atu5082	0.54	-0.3
83,729	+		Atu5082	0.55	-0.3
83,729	+		Atu5082	0.55	-0.3
83,737	-		Atu5082	0.55	+0.1
83,737	-		Atu5082	0.55	-1.4
83,794	-		Atu5082	0.58	-0.7
83,845	-		Atu5082	0.61	+0.3
83,850	+		Atu5082	0.62	-0.6
83,857	-		Atu5082	0.62	+0.6
83,867	-		Atu5082	0.62	-0.4
83,873	-		Atu5082	0.63	-2.0
84,095	-		Atu5082	0.75	-1.2
84,153	+		Atu5082	0.79	-1.7
84,161	-		Atu5082	0.79	+0.4
84,161	-		Atu5082	0.79	+0.5
84,169	+		Atu5082	0.80	-1.7
84,169	+		Atu5082	0.80	-0.5
84,191	+		Atu5082	0.81	-0.3
84,209	+		Atu5082	0.82	-1.0
84,217	-		Atu5082	0.82	-0.6
84,280	+		Atu5082	0.86	-0.3
84,303	+		Atu5082	0.87	+0.3
84,308	+		Atu5082	0.87	-1.7
84,315	+		Atu5082	0.88	-0.5
84,378	+				-0.1
84,378	+				-0.2
84,386	-				-0.4
84,405	+				-1.4
84,405	+				+0.3
84,440	+				-0.1
84,456	+				-0.2
84,492	-				+0.1
84,492	-				-0.5
84,515	-				+0.1
84,522	+				+0.4
84,525	+				-1.0
84,644	+				+0.1
84,686	+				-0.9
84,751	-				-1.3
84,818	-				-1.0
84,818	-				+0.5
84,820	+				-1.0
84,820	+				+1.3
84,828	-				+0.2
84,828	-				+0.6
84,828	-				-0.6
84,828	-				+0.0
84,857	+				-0.4
84,857	+				+0.5
84,857	+				-1.4
84,865	-		Atu5083	0.10	-1.0
84,908	-		Atu5083	0.14	+0.7
84,913	-		Atu5083	0.15	-0.0
84,913	-		Atu5083	0.15	+0.7
84,957	-		Atu5083	0.19	+0.7
85,033	-		Atu5083	0.25	+0.7
85,038	-		Atu5083	0.26	+0.4
85,083	-		Atu5083	0.30	-0.2
85,095	-		Atu5083	0.31	-0.1
85,096	-		Atu5083	0.31	-0.7
85,129	-		Atu5083	0.34	-1.0
85,160	-		Atu5083	0.37	-3.3
85,170	-		Atu5083	0.38	-0.2
85,255	-		Atu5083	0.45	+0.1
85,303	+		Atu5083	0.50	+0.3
85,309	+		Atu5083	0.50	+0.3
85,309	+		Atu5083	0.50	-0.1
85,317	-		Atu5083	0.51	+0.4
85,317	-		Atu5083	0.51	-0.1
85,330	+		Atu5083	0.52	-0.2
85,366	+		Atu5083	0.55	-0.0
85,408	+		Atu5083	0.59	-0.1
85,416	-		Atu5083	0.60	+0.5
85,416	-		Atu5083	0.60	+0.3
85,416	-		Atu5083	0.60	-1.0
85,430	-		Atu5083	0.61	-1.4
85,455	+		Atu5083	0.63	-0.5
85,501	+		Atu5083	0.67	-0.2