Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5039 and Atu5040 are separated by 73 nucleotides Atu5040 and Atu5041 overlap by 4 nucleotides
Atu5039: Atu5039 - hypothetical protein, at 39,240 to 40,421
Atu5039
Atu5040: Atu5040 - hypothetical protein, at 40,495 to 41,397
Atu5040
Atu5041: Atu5041 - plasmid partitioning protein, at 41,394 to 42,281
Atu5041
Position (kb) 39
40
41 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 38.267 kb on + strand at 38.275 kb on - strand at 38.280 kb on - strand at 38.316 kb on - strand at 38.324 kb on + strand at 38.354 kb on + strand at 38.390 kb on + strand at 38.398 kb on - strand at 38.398 kb on - strand at 38.421 kb on + strand at 38.438 kb on + strand at 38.446 kb on - strand at 38.446 kb on - strand at 38.511 kb on + strand at 38.519 kb on - strand at 38.519 kb on - strand at 38.553 kb on + strand at 38.561 kb on - strand at 38.563 kb on + strand at 38.563 kb on + strand at 38.571 kb on - strand at 38.571 kb on - strand at 38.571 kb on - strand at 38.595 kb on - strand at 38.689 kb on + strand at 38.702 kb on - strand at 38.740 kb on + strand at 38.740 kb on + strand at 38.748 kb on - strand at 38.748 kb on - strand at 38.748 kb on - strand at 38.786 kb on - strand at 38.812 kb on + strand at 38.921 kb on - strand at 38.932 kb on + strand at 38.932 kb on + strand at 38.940 kb on - strand at 39.104 kb on + strand at 39.109 kb on + strand at 39.112 kb on - strand at 39.139 kb on - strand at 39.304 kb on - strand at 39.306 kb on - strand at 39.379 kb on + strand, within Atu5039 at 39.394 kb on + strand, within Atu5039 at 39.410 kb on - strand, within Atu5039 at 39.481 kb on - strand, within Atu5039 at 39.594 kb on - strand, within Atu5039 at 39.600 kb on + strand, within Atu5039 at 39.607 kb on + strand, within Atu5039 at 39.607 kb on + strand, within Atu5039 at 39.615 kb on - strand, within Atu5039 at 39.650 kb on - strand, within Atu5039 at 39.657 kb on + strand, within Atu5039 at 39.665 kb on - strand, within Atu5039 at 39.669 kb on + strand, within Atu5039 at 39.669 kb on + strand, within Atu5039 at 39.671 kb on + strand, within Atu5039 at 39.677 kb on - strand, within Atu5039 at 39.677 kb on - strand, within Atu5039 at 39.677 kb on - strand, within Atu5039 at 39.679 kb on - strand, within Atu5039 at 39.679 kb on - strand, within Atu5039 at 39.679 kb on - strand, within Atu5039 at 39.690 kb on - strand, within Atu5039 at 39.698 kb on + strand, within Atu5039 at 39.851 kb on + strand, within Atu5039 at 39.851 kb on + strand, within Atu5039 at 39.851 kb on + strand, within Atu5039 at 39.859 kb on - strand, within Atu5039 at 39.864 kb on - strand, within Atu5039 at 39.937 kb on + strand, within Atu5039 at 39.945 kb on - strand, within Atu5039 at 39.977 kb on + strand, within Atu5039 at 40.074 kb on - strand, within Atu5039 at 40.288 kb on - strand, within Atu5039 at 40.293 kb on - strand, within Atu5039 at 40.318 kb on + strand at 40.329 kb on + strand at 40.432 kb on + strand at 40.448 kb on - strand at 40.457 kb on + strand at 40.457 kb on + strand at 40.457 kb on + strand at 40.457 kb on + strand at 40.464 kb on - strand at 40.465 kb on - strand at 40.465 kb on - strand at 40.465 kb on - strand at 40.465 kb on - strand at 40.490 kb on - strand at 40.518 kb on + strand at 40.533 kb on - strand at 40.568 kb on + strand at 40.671 kb on + strand, within Atu5040 at 40.680 kb on + strand, within Atu5040 at 40.799 kb on + strand, within Atu5040 at 40.827 kb on - strand, within Atu5040 at 40.841 kb on + strand, within Atu5040 at 40.867 kb on - strand, within Atu5040 at 40.944 kb on + strand, within Atu5040 at 40.958 kb on + strand, within Atu5040 at 40.966 kb on - strand, within Atu5040 at 41.009 kb on + strand, within Atu5040 at 41.036 kb on + strand, within Atu5040 at 41.044 kb on - strand, within Atu5040 at 41.070 kb on + strand, within Atu5040 at 41.075 kb on + strand, within Atu5040 at 41.104 kb on - strand, within Atu5040 at 41.108 kb on + strand, within Atu5040 at 41.116 kb on - strand, within Atu5040 at 41.228 kb on - strand, within Atu5040 at 41.299 kb on + strand, within Atu5040 at 41.307 kb on - strand at 41.350 kb on - strand at 41.365 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 38,267 + +0.4 38,275 - +0.4 38,280 - -1.3 38,316 - -0.4 38,324 + +0.4 38,354 + -0.2 38,390 + +0.3 38,398 - -0.2 38,398 - +1.4 38,421 + +0.8 38,438 + -1.7 38,446 - +0.5 38,446 - +0.4 38,511 + +0.5 38,519 - +1.0 38,519 - +0.6 38,553 + +0.2 38,561 - -0.1 38,563 + +0.3 38,563 + +0.9 38,571 - -1.0 38,571 - -0.1 38,571 - +0.8 38,595 - +0.2 38,689 + -0.3 38,702 - -0.3 38,740 + +0.3 38,740 + -0.8 38,748 - -1.1 38,748 - -0.5 38,748 - +0.4 38,786 - +0.4 38,812 + +0.0 38,921 - -0.6 38,932 + -1.2 38,932 + +1.0 38,940 - -2.2 39,104 + +0.0 39,109 + -0.8 39,112 - +0.3 39,139 - -0.3 39,304 - +0.9 39,306 - -2.3 39,379 + Atu5039 0.12 +0.7 39,394 + Atu5039 0.13 -0.5 39,410 - Atu5039 0.14 +0.3 39,481 - Atu5039 0.20 -0.6 39,594 - Atu5039 0.30 +0.4 39,600 + Atu5039 0.30 +0.5 39,607 + Atu5039 0.31 -0.3 39,607 + Atu5039 0.31 -0.1 39,615 - Atu5039 0.32 -0.5 39,650 - Atu5039 0.35 +0.4 39,657 + Atu5039 0.35 -0.3 39,665 - Atu5039 0.36 +0.7 39,669 + Atu5039 0.36 +1.0 39,669 + Atu5039 0.36 +0.2 39,671 + Atu5039 0.36 +1.1 39,677 - Atu5039 0.37 -2.4 39,677 - Atu5039 0.37 +0.8 39,677 - Atu5039 0.37 -1.0 39,679 - Atu5039 0.37 -0.2 39,679 - Atu5039 0.37 +0.1 39,679 - Atu5039 0.37 -0.2 39,690 - Atu5039 0.38 +0.7 39,698 + Atu5039 0.39 +0.3 39,851 + Atu5039 0.52 +0.9 39,851 + Atu5039 0.52 +2.9 39,851 + Atu5039 0.52 +0.0 39,859 - Atu5039 0.52 +2.3 39,864 - Atu5039 0.53 +0.0 39,937 + Atu5039 0.59 +0.3 39,945 - Atu5039 0.60 +0.2 39,977 + Atu5039 0.62 +1.3 40,074 - Atu5039 0.71 +0.7 40,288 - Atu5039 0.89 +0.6 40,293 - Atu5039 0.89 -0.2 40,318 + +0.5 40,329 + +1.4 40,432 + -0.1 40,448 - +0.1 40,457 + -1.6 40,457 + +0.6 40,457 + -1.0 40,457 + -0.7 40,464 - +0.1 40,465 - +0.6 40,465 - +0.3 40,465 - -1.5 40,465 - +0.4 40,490 - +1.4 40,518 + -0.3 40,533 - -2.2 40,568 + -0.3 40,671 + Atu5040 0.19 -1.6 40,680 + Atu5040 0.20 +0.3 40,799 + Atu5040 0.34 +0.2 40,827 - Atu5040 0.37 -0.2 40,841 + Atu5040 0.38 -0.4 40,867 - Atu5040 0.41 -0.5 40,944 + Atu5040 0.50 -1.9 40,958 + Atu5040 0.51 -2.0 40,966 - Atu5040 0.52 -0.3 41,009 + Atu5040 0.57 -0.1 41,036 + Atu5040 0.60 -0.2 41,044 - Atu5040 0.61 +0.4 41,070 + Atu5040 0.64 +0.0 41,075 + Atu5040 0.64 -0.4 41,104 - Atu5040 0.67 -0.3 41,108 + Atu5040 0.68 -0.1 41,116 - Atu5040 0.69 -0.8 41,228 - Atu5040 0.81 -0.4 41,299 + Atu5040 0.89 +0.3 41,307 - +0.2 41,350 - +0.3 41,365 - +0.4
Or see this region's nucleotide sequence