Strain Fitness in Agrobacterium fabrum C58 around Atu4379

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,515,955	+		Atu4377	0.78	-0.5
1,516,002	-		Atu4377	0.81	-0.9
1,516,093	-		Atu4377	0.87	-1.2
1,516,182	-				-0.3
1,516,182	-				-0.3
1,516,221	+				-0.1
1,516,222	-				-1.0
1,516,228	-				-0.2
1,516,229	-				-0.0
1,516,233	+				-2.0
1,516,233	+				-1.3
1,516,315	+				-0.9
1,516,325	+				-1.1
1,516,355	+				-0.4
1,516,386	+		Atu4378	0.12	-1.0
1,516,439	+		Atu4378	0.22	-0.3
1,516,478	+		Atu4378	0.29	+2.5
1,516,478	+		Atu4378	0.29	-0.3
1,516,493	+		Atu4378	0.31	-0.8
1,516,493	+		Atu4378	0.31	-0.0
1,516,493	+		Atu4378	0.31	+0.3
1,516,516	+		Atu4378	0.35	-0.1
1,516,524	+		Atu4378	0.37	+0.4
1,516,693	-		Atu4378	0.67	-0.2
1,516,695	+		Atu4378	0.67	-0.2
1,516,703	-		Atu4378	0.69	-1.7
1,516,703	-		Atu4378	0.69	+0.2
1,516,729	+		Atu4378	0.73	-0.4
1,516,730	+		Atu4378	0.73	+0.2
1,516,730	+		Atu4378	0.73	+0.6
1,516,730	+		Atu4378	0.73	-2.0
1,516,730	+		Atu4378	0.73	-0.2
1,516,730	+		Atu4378	0.73	-0.0
1,516,738	-		Atu4378	0.75	+0.4
1,516,738	-		Atu4378	0.75	-0.1
1,516,738	-		Atu4378	0.75	-0.0
1,516,747	-		Atu4378	0.76	-0.3
1,516,856	+				+0.2
1,516,859	-				+0.3
1,516,895	-				+0.1
1,516,914	+				+0.2
1,516,927	+				-0.1
1,516,965	-				+0.0
1,517,104	-		Atu4379	0.39	-1.1
1,517,104	-		Atu4379	0.39	-0.2
1,517,142	+		Atu4379	0.49	-0.5
1,517,189	-		Atu4379	0.61	-0.5
1,517,190	+		Atu4379	0.61	-0.4
1,517,190	+		Atu4379	0.61	-0.6
1,517,190	+		Atu4379	0.61	-0.5
1,517,376	-				-1.0
1,517,392	-				+1.5
1,517,398	-				+0.5
1,517,412	+				-0.8
1,517,420	-				+0.3
1,517,420	-				-1.4
1,517,420	-				+0.8
1,517,420	-				-0.4
1,517,422	+				+0.4
1,517,446	+				-0.9
1,517,495	+		Atu4380	0.12	-1.1
1,517,502	-		Atu4380	0.13	+2.9
1,517,524	-		Atu4380	0.16	+2.0
1,517,573	-		Atu4380	0.23	+0.3
1,517,606	+		Atu4380	0.27	+0.7
1,517,786	-		Atu4380	0.53	+1.9
1,517,849	+		Atu4380	0.62	-0.1
1,517,946	-		Atu4380	0.76	+0.3
1,517,971	-		Atu4380	0.79	-0.8
1,517,974	-		Atu4380	0.80	+0.2
1,517,978	+		Atu4380	0.80	-2.4
1,517,979	+		Atu4380	0.80	+0.7
1,517,987	-		Atu4380	0.82	+0.7
1,518,099	-				+0.2
1,518,199	-				+0.7
1,518,326	-				-0.5