Strain Fitness in Agrobacterium fabrum C58 around Atu4193

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,314,861	-		Atu4192	0.59	-0.2
1,314,876	-		Atu4192	0.59	-0.3
1,314,950	-		Atu4192	0.63	-0.1
1,315,062	-		Atu4192	0.69	+0.7
1,315,171	-		Atu4192	0.74	+0.6
1,315,181	-		Atu4192	0.75	+1.3
1,315,181	-		Atu4192	0.75	+0.0
1,315,189	+		Atu4192	0.75	-0.3
1,315,199	+		Atu4192	0.76	-0.3
1,315,212	+		Atu4192	0.77	+0.4
1,315,234	+		Atu4192	0.78	-0.1
1,315,236	+		Atu4192	0.78	+0.9
1,315,236	+		Atu4192	0.78	+0.0
1,315,236	+		Atu4192	0.78	-0.0
1,315,244	-		Atu4192	0.78	-0.1
1,315,345	+		Atu4192	0.83	-1.3
1,315,439	-		Atu4192	0.88	-0.5
1,315,470	+		Atu4192	0.90	+0.4
1,315,549	-				-0.6
1,315,631	+				+0.0
1,315,934	-		Atu4193	0.16	-0.7
1,315,939	-		Atu4193	0.16	-0.2
1,315,944	-		Atu4193	0.17	+0.1
1,315,956	+		Atu4193	0.18	-0.8
1,315,965	-		Atu4193	0.19	-0.5
1,316,008	-		Atu4193	0.23	-0.7
1,316,068	+		Atu4193	0.29	-0.9
1,316,149	-		Atu4193	0.37	-0.0
1,316,153	+		Atu4193	0.38	-1.3
1,316,200	-		Atu4193	0.43	-0.2
1,316,207	-		Atu4193	0.43	+0.7
1,316,297	+		Atu4193	0.52	-0.3
1,316,297	+		Atu4193	0.52	-1.6
1,316,317	-		Atu4193	0.55	+0.1
1,316,355	+		Atu4193	0.58	-1.9
1,316,609	+		Atu4193	0.84	+0.3
1,316,614	+		Atu4193	0.85	-0.4
1,316,679	+				-1.2
1,316,679	+				-0.6
1,316,679	+				-0.1
1,316,687	-				-0.4
1,316,687	-				-0.4
1,316,751	-				+0.8
1,316,787	+				+0.4
1,317,033	-		Atu4194	0.23	+0.0
1,317,046	+		Atu4194	0.24	+0.0
1,317,153	+		Atu4194	0.34	+0.6
1,317,169	-		Atu4194	0.35	+0.0
1,317,195	+		Atu4194	0.37	-0.2
1,317,231	-		Atu4194	0.41	-0.7
1,317,246	+		Atu4194	0.42	-0.1
1,317,246	+		Atu4194	0.42	-0.4
1,317,246	+		Atu4194	0.42	+0.1
1,317,246	+		Atu4194	0.42	-0.4
1,317,246	+		Atu4194	0.42	+0.1
1,317,254	-		Atu4194	0.43	-0.5
1,317,254	-		Atu4194	0.43	-0.9
1,317,256	-		Atu4194	0.43	+0.1
1,317,490	+		Atu4194	0.64	-0.2
1,317,508	-		Atu4194	0.65	-0.9
1,317,567	-		Atu4194	0.70	+0.2
1,317,619	-		Atu4194	0.75	-0.6
1,317,671	+		Atu4194	0.80	-3.1
1,317,705	+		Atu4194	0.83	-0.4
1,317,759	-		Atu4194	0.87	-0.2
1,317,759	-		Atu4194	0.87	-0.6