Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3892 and Atu3893 are separated by 2 nucleotides Atu3893 and Atu3894 are separated by 3 nucleotides Atu3894 and Atu3895 are separated by 2 nucleotides
Atu3892: Atu3892 - hypothetical protein, at 987,992 to 988,285
Atu3892
Atu3893: Atu3893 - sugarl ABC transporter permease, at 988,288 to 989,202
Atu3893
Atu3894: Atu3894 - sugar ABC transporter permease, at 989,206 to 990,072
Atu3894
Atu3895: Atu3895 - sugar ABC transporter ATPase, at 990,075 to 991,145
Atu3895
Position (kb) 989
990
991 Strain fitness (log2 ratio) -1
0
1
2
3 at 988.247 kb on + strand, within Atu3892 at 988.255 kb on - strand, within Atu3892 at 988.287 kb on + strand at 988.294 kb on - strand at 988.294 kb on - strand at 988.317 kb on - strand at 988.389 kb on + strand, within Atu3893 at 988.397 kb on - strand, within Atu3893 at 988.416 kb on + strand, within Atu3893 at 988.490 kb on + strand, within Atu3893 at 988.671 kb on + strand, within Atu3893 at 988.708 kb on - strand, within Atu3893 at 988.761 kb on + strand, within Atu3893 at 988.828 kb on + strand, within Atu3893 at 988.828 kb on + strand, within Atu3893 at 988.870 kb on + strand, within Atu3893 at 988.904 kb on + strand, within Atu3893 at 988.924 kb on + strand, within Atu3893 at 988.950 kb on - strand, within Atu3893 at 988.950 kb on - strand, within Atu3893 at 988.973 kb on + strand, within Atu3893 at 989.050 kb on + strand, within Atu3893 at 989.051 kb on + strand, within Atu3893 at 989.105 kb on + strand, within Atu3893 at 989.114 kb on + strand at 989.123 kb on + strand at 989.124 kb on + strand at 989.125 kb on + strand at 989.130 kb on + strand at 989.187 kb on + strand at 989.195 kb on - strand at 989.195 kb on - strand at 989.202 kb on + strand at 989.232 kb on + strand at 989.235 kb on - strand at 989.237 kb on + strand at 989.237 kb on + strand at 989.240 kb on - strand at 989.245 kb on - strand at 989.246 kb on + strand at 989.247 kb on + strand at 989.247 kb on - strand at 989.252 kb on + strand at 989.252 kb on + strand at 989.314 kb on - strand, within Atu3894 at 989.314 kb on - strand, within Atu3894 at 989.353 kb on - strand, within Atu3894 at 989.362 kb on - strand, within Atu3894 at 989.362 kb on - strand, within Atu3894 at 989.385 kb on + strand, within Atu3894 at 989.416 kb on + strand, within Atu3894 at 989.477 kb on + strand, within Atu3894 at 989.477 kb on + strand, within Atu3894 at 989.485 kb on - strand, within Atu3894 at 989.577 kb on + strand, within Atu3894 at 989.595 kb on - strand, within Atu3894 at 989.595 kb on - strand, within Atu3894 at 989.644 kb on + strand, within Atu3894 at 989.742 kb on - strand, within Atu3894 at 989.750 kb on + strand, within Atu3894 at 989.892 kb on + strand, within Atu3894 at 989.899 kb on + strand, within Atu3894 at 989.959 kb on + strand, within Atu3894 at 989.959 kb on + strand, within Atu3894 at 989.967 kb on - strand, within Atu3894 at 989.967 kb on - strand, within Atu3894 at 989.967 kb on - strand, within Atu3894 at 990.087 kb on - strand at 990.189 kb on + strand, within Atu3895 at 990.217 kb on + strand, within Atu3895 at 990.330 kb on - strand, within Atu3895 at 990.353 kb on + strand, within Atu3895 at 990.501 kb on + strand, within Atu3895 at 990.531 kb on - strand, within Atu3895 at 990.536 kb on - strand, within Atu3895 at 990.536 kb on - strand, within Atu3895 at 990.536 kb on - strand, within Atu3895 at 990.541 kb on + strand, within Atu3895 at 990.551 kb on + strand, within Atu3895 at 990.553 kb on - strand, within Atu3895 at 990.556 kb on + strand, within Atu3895 at 990.559 kb on - strand, within Atu3895 at 990.592 kb on + strand, within Atu3895 at 990.593 kb on - strand, within Atu3895 at 990.594 kb on + strand, within Atu3895 at 990.600 kb on - strand, within Atu3895 at 990.672 kb on - strand, within Atu3895 at 990.711 kb on - strand, within Atu3895 at 990.741 kb on + strand, within Atu3895 at 990.828 kb on - strand, within Atu3895 at 990.882 kb on - strand, within Atu3895 at 990.890 kb on + strand, within Atu3895 at 990.896 kb on - strand, within Atu3895 at 990.956 kb on + strand, within Atu3895 at 990.964 kb on - strand, within Atu3895 at 990.966 kb on + strand, within Atu3895 at 991.000 kb on + strand, within Atu3895 at 991.018 kb on + strand, within Atu3895 at 991.026 kb on - strand, within Atu3895 at 991.046 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 988,247 + Atu3892 0.87 +2.0 988,255 - Atu3892 0.89 +0.2 988,287 + +1.1 988,294 - +0.3 988,294 - +1.3 988,317 - -0.4 988,389 + Atu3893 0.11 +0.3 988,397 - Atu3893 0.12 +1.7 988,416 + Atu3893 0.14 -0.4 988,490 + Atu3893 0.22 +2.8 988,671 + Atu3893 0.42 +0.5 988,708 - Atu3893 0.46 +0.9 988,761 + Atu3893 0.52 +0.7 988,828 + Atu3893 0.59 +0.2 988,828 + Atu3893 0.59 +0.5 988,870 + Atu3893 0.64 +0.7 988,904 + Atu3893 0.67 +1.1 988,924 + Atu3893 0.70 -0.2 988,950 - Atu3893 0.72 +0.2 988,950 - Atu3893 0.72 +0.1 988,973 + Atu3893 0.75 +0.3 989,050 + Atu3893 0.83 +0.3 989,051 + Atu3893 0.83 -0.3 989,105 + Atu3893 0.89 +0.0 989,114 + +0.3 989,123 + +0.0 989,124 + -0.2 989,125 + +1.2 989,130 + -0.3 989,187 + -0.1 989,195 - -0.9 989,195 - +0.7 989,202 + -0.1 989,232 + +0.0 989,235 - -0.3 989,237 + -0.7 989,237 + -1.1 989,240 - +0.3 989,245 - -0.2 989,246 + +0.0 989,247 + +0.9 989,247 - +0.1 989,252 + +0.5 989,252 + +0.3 989,314 - Atu3894 0.12 +1.3 989,314 - Atu3894 0.12 +0.5 989,353 - Atu3894 0.17 +0.3 989,362 - Atu3894 0.18 +0.3 989,362 - Atu3894 0.18 +1.4 989,385 + Atu3894 0.21 +0.5 989,416 + Atu3894 0.24 +1.1 989,477 + Atu3894 0.31 +0.3 989,477 + Atu3894 0.31 +0.4 989,485 - Atu3894 0.32 -0.4 989,577 + Atu3894 0.43 +0.5 989,595 - Atu3894 0.45 -0.5 989,595 - Atu3894 0.45 +0.6 989,644 + Atu3894 0.51 +0.7 989,742 - Atu3894 0.62 +0.3 989,750 + Atu3894 0.63 +0.6 989,892 + Atu3894 0.79 +0.6 989,899 + Atu3894 0.80 +0.2 989,959 + Atu3894 0.87 +0.1 989,959 + Atu3894 0.87 +0.7 989,967 - Atu3894 0.88 +0.6 989,967 - Atu3894 0.88 +0.2 989,967 - Atu3894 0.88 +1.4 990,087 - +1.2 990,189 + Atu3895 0.11 +0.3 990,217 + Atu3895 0.13 +0.5 990,330 - Atu3895 0.24 +1.0 990,353 + Atu3895 0.26 +0.6 990,501 + Atu3895 0.40 +0.1 990,531 - Atu3895 0.43 +1.1 990,536 - Atu3895 0.43 +0.5 990,536 - Atu3895 0.43 +1.1 990,536 - Atu3895 0.43 +0.1 990,541 + Atu3895 0.44 +0.3 990,551 + Atu3895 0.44 -0.3 990,553 - Atu3895 0.45 +0.3 990,556 + Atu3895 0.45 +0.1 990,559 - Atu3895 0.45 +0.0 990,592 + Atu3895 0.48 -1.0 990,593 - Atu3895 0.48 +0.6 990,594 + Atu3895 0.48 +0.5 990,600 - Atu3895 0.49 +0.3 990,672 - Atu3895 0.56 +0.5 990,711 - Atu3895 0.59 -0.2 990,741 + Atu3895 0.62 +0.3 990,828 - Atu3895 0.70 +0.7 990,882 - Atu3895 0.75 +0.3 990,890 + Atu3895 0.76 +0.6 990,896 - Atu3895 0.77 +0.5 990,956 + Atu3895 0.82 +0.1 990,964 - Atu3895 0.83 +0.8 990,966 + Atu3895 0.83 +0.6 991,000 + Atu3895 0.86 +1.3 991,018 + Atu3895 0.88 +0.3 991,026 - Atu3895 0.89 +0.6 991,046 + -0.5
Or see this region's nucleotide sequence