Strain Fitness in Agrobacterium fabrum C58 around Atu3804

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
899,321	-		Atu3803	0.53	-0.8
899,341	+		Atu3803	0.54	+0.3
899,341	+		Atu3803	0.54	+0.7
899,349	-		Atu3803	0.54	+0.4
899,349	-		Atu3803	0.54	+0.1
899,349	-		Atu3803	0.54	+0.2
899,350	+		Atu3803	0.55	+0.4
899,350	+		Atu3803	0.55	+1.0
899,358	-		Atu3803	0.55	-0.2
899,396	-		Atu3803	0.58	+0.4
899,413	-		Atu3803	0.59	-0.2
899,418	-		Atu3803	0.59	-0.9
899,418	-		Atu3803	0.59	+0.6
899,835	-		Atu3803	0.87	-0.5
899,910	-				+0.8
899,917	+				+0.5
899,923	-				+0.5
899,942	+				-0.3
900,092	+				-0.3
900,092	+				+0.1
900,126	-				+0.6
900,140	+				+0.3
900,290	-				-1.0
900,309	-				+0.2
900,317	-				+2.0
900,325	-				+0.5
900,334	+				+0.5
900,574	+		Atu3804	0.23	-0.8
900,674	+		Atu3804	0.31	+0.5
900,682	-		Atu3804	0.32	-0.7
900,696	+		Atu3804	0.33	-0.1
900,810	+		Atu3804	0.42	+0.2
900,864	+		Atu3804	0.47	-0.8
900,864	+		Atu3804	0.47	+0.1
900,872	-		Atu3804	0.47	+0.2
900,975	+		Atu3804	0.56	+0.8
900,981	+		Atu3804	0.56	-3.1
900,983	-		Atu3804	0.57	-0.6
901,006	+		Atu3804	0.58	-0.1
901,034	+		Atu3804	0.61	-0.3
901,058	-		Atu3804	0.63	-0.6
901,060	+		Atu3804	0.63	-1.0
901,060	+		Atu3804	0.63	-1.4
901,067	+		Atu3804	0.64	-1.1
901,077	-		Atu3804	0.64	-0.6
901,077	-		Atu3804	0.64	-0.3
901,121	+		Atu3804	0.68	+0.6
901,121	+		Atu3804	0.68	-0.3
901,129	-		Atu3804	0.69	-0.1
901,129	-		Atu3804	0.69	-0.1
901,142	+		Atu3804	0.70	-1.4
901,361	-		Atu3804	0.88	+0.2
901,405	-				-0.5
901,457	+				-0.4
901,457	+				+0.5
901,465	-				-0.3
901,487	-				-0.0
901,487	-				-1.5
901,487	-				-2.2
901,487	-				+0.4
901,529	+				+0.1
901,539	+				-0.8
901,539	+				-0.5
901,547	-				+0.1
901,569	+				-0.9
901,676	+				-0.1
901,684	-				+0.6
901,686	-				-0.4
901,689	+				+0.8
901,697	-				-1.0
901,697	-				+0.2
901,739	+				+0.1
901,811	-				-0.1
901,836	+				-1.7
901,874	+		Atu3805	0.13	+0.4
901,875	+		Atu3805	0.14	+0.5
901,875	+		Atu3805	0.14	-0.1
901,940	+		Atu3805	0.20	-0.0
901,944	+		Atu3805	0.21	-1.8
901,952	-		Atu3805	0.22	+0.1
901,963	-		Atu3805	0.23	-0.3
901,980	+		Atu3805	0.25	+0.1
901,980	+		Atu3805	0.25	+1.0
901,980	+		Atu3805	0.25	-1.0
901,988	-		Atu3805	0.25	-0.5
901,988	-		Atu3805	0.25	+2.3
902,044	-		Atu3805	0.31	+0.7
902,066	-		Atu3805	0.34	-0.0
902,194	-		Atu3805	0.47	-0.2
902,194	-		Atu3805	0.47	-2.2
902,197	+		Atu3805	0.47	+0.2
902,262	-		Atu3805	0.54	+0.6
902,357	+		Atu3805	0.64	-0.9
902,357	+		Atu3805	0.64	-0.1
902,358	-		Atu3805	0.64	+0.5
902,365	-		Atu3805	0.65	+0.8
902,418	+		Atu3805	0.71	+0.6
902,421	+		Atu3805	0.71	-0.5