Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3494 and Atu3495 are separated by 161 nucleotides Atu3495 and Atu3496 are separated by 9 nucleotides Atu3496 and Atu3497 are separated by 180 nucleotides
Atu3494: Atu3494 - hypothetical protein, at 545,112 to 545,807
Atu3494
Atu3495: Atu3495 - diguanylate cyclase, at 545,969 to 547,903
Atu3495
Atu3496: Atu3496 - hypothetical protein, at 547,913 to 548,419
Atu3496
Atu3497: Atu3497 - hypothetical protein, at 548,600 to 548,947
Atu3497
Position (kb) 545
546
547
548 Strain fitness (log2 ratio) -1
0
1
2 at 544.970 kb on + strand at 544.985 kb on - strand at 545.117 kb on - strand at 545.197 kb on + strand, within Atu3494 at 545.220 kb on - strand, within Atu3494 at 545.256 kb on - strand, within Atu3494 at 545.361 kb on - strand, within Atu3494 at 545.422 kb on + strand, within Atu3494 at 545.427 kb on + strand, within Atu3494 at 545.435 kb on - strand, within Atu3494 at 545.473 kb on + strand, within Atu3494 at 545.489 kb on + strand, within Atu3494 at 545.675 kb on + strand, within Atu3494 at 545.738 kb on + strand at 545.749 kb on + strand at 545.777 kb on + strand at 546.076 kb on - strand at 546.203 kb on - strand, within Atu3495 at 546.203 kb on - strand, within Atu3495 at 546.243 kb on - strand, within Atu3495 at 546.410 kb on - strand, within Atu3495 at 546.415 kb on + strand, within Atu3495 at 546.415 kb on + strand, within Atu3495 at 546.892 kb on + strand, within Atu3495 at 546.892 kb on + strand, within Atu3495 at 546.892 kb on + strand, within Atu3495 at 547.069 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.327 kb on - strand, within Atu3495 at 547.409 kb on - strand, within Atu3495 at 547.537 kb on + strand, within Atu3495 at 547.537 kb on + strand, within Atu3495 at 547.544 kb on - strand, within Atu3495 at 547.545 kb on - strand, within Atu3495 at 547.545 kb on - strand, within Atu3495 at 547.553 kb on - strand, within Atu3495 at 547.553 kb on - strand, within Atu3495 at 547.558 kb on + strand, within Atu3495 at 547.635 kb on + strand, within Atu3495 at 547.826 kb on - strand at 547.877 kb on - strand at 547.883 kb on - strand at 548.113 kb on - strand, within Atu3496 at 548.232 kb on - strand, within Atu3496 at 548.404 kb on - strand at 548.624 kb on - strand at 548.827 kb on - strand, within Atu3497
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 544,970 + +0.5 544,985 - -0.9 545,117 - -0.2 545,197 + Atu3494 0.12 +0.1 545,220 - Atu3494 0.16 -0.1 545,256 - Atu3494 0.21 +0.3 545,361 - Atu3494 0.36 +0.9 545,422 + Atu3494 0.45 +0.2 545,427 + Atu3494 0.45 -1.6 545,435 - Atu3494 0.46 -0.7 545,473 + Atu3494 0.52 +0.1 545,489 + Atu3494 0.54 +0.4 545,675 + Atu3494 0.81 +0.1 545,738 + -0.5 545,749 + +0.0 545,777 + -0.7 546,076 - +1.8 546,203 - Atu3495 0.12 +1.3 546,203 - Atu3495 0.12 +0.6 546,243 - Atu3495 0.14 +1.0 546,410 - Atu3495 0.23 +1.6 546,415 + Atu3495 0.23 +1.7 546,415 + Atu3495 0.23 +1.0 546,892 + Atu3495 0.48 +1.1 546,892 + Atu3495 0.48 +0.5 546,892 + Atu3495 0.48 +0.6 547,069 + Atu3495 0.57 +0.5 547,319 + Atu3495 0.70 +0.5 547,319 + Atu3495 0.70 +1.1 547,319 + Atu3495 0.70 +0.6 547,319 + Atu3495 0.70 +0.6 547,327 - Atu3495 0.70 -0.6 547,409 - Atu3495 0.74 +0.4 547,537 + Atu3495 0.81 +1.2 547,537 + Atu3495 0.81 +1.1 547,544 - Atu3495 0.81 +0.2 547,545 - Atu3495 0.81 +0.5 547,545 - Atu3495 0.81 +1.0 547,553 - Atu3495 0.82 +1.3 547,553 - Atu3495 0.82 +1.2 547,558 + Atu3495 0.82 +0.4 547,635 + Atu3495 0.86 +0.8 547,826 - +0.4 547,877 - +0.9 547,883 - +0.5 548,113 - Atu3496 0.39 +1.1 548,232 - Atu3496 0.63 +1.1 548,404 - +0.9 548,624 - +0.3 548,827 - Atu3497 0.65 -0.2
Or see this region's nucleotide sequence