Strain Fitness in Agrobacterium fabrum C58 around Atu3101

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
107,312	+				-0.1
107,337	-				-1.2
107,383	-				-3.5
107,394	-				+1.7
107,404	-				+0.2
107,446	+				-0.5
107,539	+		Atu3100	0.18	-0.1
107,600	+		Atu3100	0.25	+0.0
107,659	-		Atu3100	0.32	-1.1
107,780	-		Atu3100	0.47	+0.0
107,817	+		Atu3100	0.52	+1.0
107,859	-		Atu3100	0.57	-0.7
107,859	-		Atu3100	0.57	+1.2
107,874	+		Atu3100	0.58	-0.1
107,935	+		Atu3100	0.66	+0.4
108,089	+		Atu3100	0.84	-0.3
108,129	+		Atu3100	0.89	-0.5
108,129	+		Atu3100	0.89	-0.8
108,137	-				-2.2
108,147	+				+0.6
108,187	-				-0.2
108,215	+				-0.5
108,220	-				-1.3
108,232	-				+1.0
108,381	-		Atu3101	0.19	+0.3
108,392	+		Atu3101	0.20	-0.1
108,400	-		Atu3101	0.21	+0.7
108,445	-		Atu3101	0.26	+0.3
108,458	+		Atu3101	0.28	+0.5
108,501	+		Atu3101	0.33	-0.3
108,576	+		Atu3101	0.41	+0.8
108,576	+		Atu3101	0.41	+0.7
108,584	-		Atu3101	0.42	-0.2
108,584	-		Atu3101	0.42	+0.1
108,735	+		Atu3101	0.59	+1.2
108,750	+		Atu3101	0.61	+1.8
108,774	-		Atu3101	0.64	+0.3
108,789	+		Atu3101	0.65	+0.5
108,792	-		Atu3101	0.66	+0.1
108,893	+		Atu3101	0.77	+0.9
108,937	+		Atu3101	0.82	+0.7
108,958	+		Atu3101	0.85	+0.0
108,966	-		Atu3101	0.86	+0.4
108,966	-		Atu3101	0.86	-0.1
109,046	+				-0.1
109,094	+				-0.5
109,094	+				-0.2
109,106	+				-0.4
109,121	-				+0.6
109,143	-				-0.7
109,180	+				+0.1
109,193	+				-0.0
109,209	-				-0.4
109,254	+				+1.3
109,281	+				+0.3
109,281	+				-0.7
109,361	+		Atu3102	0.15	-0.3
109,409	-		Atu3102	0.19	-0.5
109,454	+		Atu3102	0.22	+0.1
109,462	-		Atu3102	0.23	+0.2
109,520	-		Atu3102	0.28	-0.3
109,685	-		Atu3102	0.41	+0.5
109,712	-		Atu3102	0.43	-0.6
109,712	-		Atu3102	0.43	+1.4
109,788	-		Atu3102	0.49	+0.3
109,986	-		Atu3102	0.64	-0.8
110,042	+		Atu3102	0.69	-0.2
110,050	-		Atu3102	0.69	-0.5