Strain Fitness in Agrobacterium fabrum C58 around Atu2217

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
2,184,371	+		Atu2216	0.21	+0.9
2,184,404	-		Atu2216	0.24	-0.7
2,184,433	-		Atu2216	0.27	+0.3
2,184,435	+		Atu2216	0.27	-1.4
2,184,489	-		Atu2216	0.32	-0.3
2,184,549	+		Atu2216	0.37	-0.0
2,184,557	-		Atu2216	0.38	-0.1
2,184,559	+		Atu2216	0.38	-0.2
2,184,575	-		Atu2216	0.39	+1.1
2,184,658	+		Atu2216	0.46	-1.6
2,184,705	+		Atu2216	0.50	+0.6
2,184,705	+		Atu2216	0.50	-0.5
2,184,706	-		Atu2216	0.50	+0.1
2,184,775	+		Atu2216	0.56	-1.9
2,184,783	-		Atu2216	0.57	-0.1
2,184,826	-		Atu2216	0.61	-1.0
2,184,998	+		Atu2216	0.76	+0.3
2,184,998	+		Atu2216	0.76	-0.5
2,185,006	-		Atu2216	0.76	-1.2
2,185,006	-		Atu2216	0.76	+0.8
2,185,264	+				+0.3
2,185,294	-				-0.3
2,185,339	-				+1.7
2,185,436	-				-1.4
2,185,491	-		Atu2217	0.17	-1.2
2,185,506	+		Atu2217	0.19	-1.8
2,185,593	-		Atu2217	0.30	-0.3
2,185,693	-		Atu2217	0.44	-0.6
2,185,700	-		Atu2217	0.45	-0.6
2,185,789	+		Atu2217	0.57	+0.0
2,185,838	+		Atu2217	0.63	-2.6
2,185,839	-		Atu2217	0.63	-1.9
2,185,879	-		Atu2217	0.69	-1.9
2,185,893	-		Atu2217	0.71	-1.0
2,186,045	+				-0.1
2,186,058	-				-0.5
2,186,084	+				+1.3