Strain Fitness in Agrobacterium fabrum C58 around Atu1539

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,527,914	-		Atu1537	0.63	-0.6
1,527,931	+		Atu1537	0.64	+0.1
1,527,987	+		Atu1537	0.67	-0.3
1,528,165	-		Atu1537	0.78	+0.1
1,528,172	-		Atu1537	0.78	-0.5
1,528,270	+		Atu1537	0.85	+0.3
1,528,319	+		Atu1537	0.88	-0.8
1,528,380	+				-0.4
1,528,418	-				-1.5
1,528,459	+				-1.0
1,528,510	+				+0.2
1,528,537	+				-0.1
1,528,537	+				-0.2
1,528,577	-				-0.6
1,528,625	-				+0.2
1,528,625	-				-0.3
1,528,669	-				+0.4
1,528,689	-				+0.7
1,528,752	+				-0.5
1,528,859	-				-0.3
1,528,869	+				+0.1
1,528,921	+				+0.1
1,529,106	+		Atu1539	0.15	+0.3
1,529,189	+		Atu1539	0.20	+0.4
1,529,332	+		Atu1539	0.29	+0.0
1,529,340	-		Atu1539	0.29	+0.4
1,529,350	+		Atu1539	0.30	+0.4
1,529,513	+		Atu1539	0.40	+1.4
1,529,647	+		Atu1539	0.48	-0.1
1,529,650	-		Atu1539	0.49	+0.6
1,529,693	-		Atu1539	0.51	-0.3
1,529,712	+		Atu1539	0.52	+0.0
1,529,894	+		Atu1539	0.64	+0.1
1,529,902	-		Atu1539	0.64	-1.3
1,530,227	+		Atu1539	0.84	-0.6
1,530,267	-		Atu1539	0.87	-0.1
1,530,279	-		Atu1539	0.88	+0.2
1,530,281	+		Atu1539	0.88	+0.8
1,530,286	+		Atu1539	0.88	+0.8
1,530,305	+		Atu1539	0.89	+1.3
1,530,365	-				-0.2
1,530,500	-				+0.7
1,530,548	+		Atu1540	0.12	-3.3
1,530,578	-		Atu1540	0.17	+0.2
1,530,581	-		Atu1540	0.17	-0.4
1,530,655	+		Atu1540	0.29	-2.6
1,530,655	+		Atu1540	0.29	+0.1
1,530,655	+		Atu1540	0.29	-0.5
1,530,660	+		Atu1540	0.30	+0.5
1,530,663	-		Atu1540	0.30	+0.5
1,530,698	+		Atu1540	0.36	+0.4
1,530,698	-		Atu1540	0.36	-0.7
1,530,700	+		Atu1540	0.36	+1.2
1,530,707	-		Atu1540	0.37	+0.4
1,530,787	-		Atu1540	0.50	-1.2
1,530,787	-		Atu1540	0.50	-0.1
1,530,807	-		Atu1540	0.54	+0.0
1,530,865	+		Atu1540	0.63	-0.9
1,530,899	+		Atu1540	0.68	-0.1
1,530,907	-		Atu1540	0.70	-0.0
1,531,005	+		Atu1540	0.86	+0.8
1,531,034	+				+0.5
1,531,072	-				+0.3
1,531,074	+				+0.5
1,531,082	-				+0.7
1,531,116	-				+0.1
1,531,250	-				+0.9
1,531,255	+				+0.7
1,531,263	-				+0.5
1,531,324	-		Atu1541	0.11	-0.3