Strain Fitness in Agrobacterium fabrum C58 around Atu1419

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,414,625	+		Atu1418	0.28	+0.6
1,414,804	-		Atu1418	0.47	+1.2
1,414,806	+		Atu1418	0.47	+0.9
1,414,812	-		Atu1418	0.48	-0.0
1,414,812	-		Atu1418	0.48	+0.4
1,414,986	+		Atu1418	0.67	+0.8
1,415,003	-		Atu1418	0.69	-0.7
1,415,003	-		Atu1418	0.69	-0.8
1,415,076	+		Atu1418	0.77	+0.3
1,415,133	+		Atu1418	0.83	-0.5
1,415,133	+		Atu1418	0.83	-1.3
1,415,225	+				-0.4
1,415,476	-				+0.1
1,415,498	-				+0.8
1,415,520	-				+0.8
1,415,606	+				-1.8
1,415,842	+		Atu1419	0.33	-2.1
1,415,857	+		Atu1419	0.35	-0.6
1,415,882	-		Atu1419	0.39	-0.8
1,415,890	-		Atu1419	0.40	-1.7
1,415,944	+		Atu1419	0.47	-0.8
1,415,949	+		Atu1419	0.48	-1.7
1,415,954	+		Atu1419	0.48	-2.0
1,416,215	+		Atu1419	0.84	-1.5
1,416,609	+				+0.0
1,416,643	-		Atu1420	0.11	+0.2
1,416,653	-		Atu1420	0.12	-0.6
1,416,865	-		Atu1420	0.27	+0.3
1,416,875	-		Atu1420	0.27	-0.4
1,416,884	+		Atu1420	0.28	-0.2
1,416,887	-		Atu1420	0.28	+0.1
1,416,919	+		Atu1420	0.30	+0.4
1,417,096	+		Atu1420	0.43	-1.9
1,417,130	-		Atu1420	0.45	+0.7
1,417,160	+		Atu1420	0.47	+1.3
1,417,206	-		Atu1420	0.51	-1.0
1,417,268	+		Atu1420	0.55	-0.1