Strain Fitness in Agrobacterium fabrum C58 around Atu1389

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,382,257	-				-0.8
1,382,492	-		Atu1388	0.37	-0.4
1,382,532	+		Atu1388	0.42	-0.1
1,382,591	+		Atu1388	0.49	-0.1
1,382,591	+		Atu1388	0.49	-0.1
1,382,630	+		Atu1388	0.54	+1.2
1,382,644	-		Atu1388	0.56	+0.1
1,382,668	-		Atu1388	0.59	-0.3
1,382,678	-		Atu1388	0.60	+0.2
1,382,678	-		Atu1388	0.60	+0.4
1,382,751	+		Atu1388	0.70	+0.0
1,382,769	+		Atu1388	0.72	-0.3
1,382,930	-				-0.5
1,383,040	+				+1.8
1,383,313	+		Atu1389	0.36	+0.9
1,383,319	+		Atu1389	0.37	+0.0
1,383,328	+		Atu1389	0.39	+0.6
1,383,352	+		Atu1389	0.42	+1.5
1,383,439	+		Atu1389	0.55	-0.3
1,383,445	+		Atu1389	0.56	+1.3
1,383,450	+		Atu1389	0.57	-1.9
1,383,450	+		Atu1389	0.57	+0.8
1,383,504	-		Atu1389	0.65	-0.2
1,383,530	+		Atu1389	0.69	+1.1
1,383,630	+		Atu1389	0.83	+0.2
1,383,664	-		Atu1389	0.89	+1.0
1,383,805	-		Atu1390	0.10	-0.1
1,383,898	+		Atu1390	0.24	+0.1
1,384,124	-		Atu1390	0.59	-0.1
1,384,195	+		Atu1390	0.69	+0.2
1,384,212	+		Atu1390	0.72	-0.2
1,384,243	+		Atu1390	0.77	+0.8
1,384,243	+		Atu1390	0.77	-1.1
1,384,243	+		Atu1390	0.77	+0.3
1,384,251	-		Atu1390	0.78	-1.1
1,384,251	-		Atu1390	0.78	+1.1
1,384,251	-		Atu1390	0.78	+0.4
1,384,259	+		Atu1390	0.79	+0.2
1,384,259	+		Atu1390	0.79	+0.1
1,384,282	+		Atu1390	0.83	+0.5
1,384,292	+		Atu1390	0.84	-0.4
1,384,300	-		Atu1390	0.85	+0.3
1,384,327	+		Atu1390	0.89	+1.5
1,384,327	+		Atu1390	0.89	+1.2
1,384,327	+		Atu1390	0.89	-0.7
1,384,332	+				+0.1
1,384,335	-				+0.8
1,384,335	-				-0.2
1,384,335	-				+1.4
1,384,335	-				+1.1
1,384,335	-				-1.9
1,384,335	-				+0.9
1,384,335	-				-0.3
1,384,335	-				-0.2
1,384,377	-				-0.5
1,384,415	-				+1.6
1,384,425	+				-0.8
1,384,434	+				+0.7
1,384,442	-				+0.3
1,384,449	-		Atu1391	0.10	+1.1
1,384,546	+		Atu1391	0.23	+0.3
1,384,642	-		Atu1391	0.36	+0.2
1,384,681	+		Atu1391	0.42	+0.5
1,384,687	-		Atu1391	0.43	+0.1
1,384,736	-		Atu1391	0.49	+0.5
1,384,736	-		Atu1391	0.49	+0.3