Strain Fitness in Agrobacterium fabrum C58 around Atu1334

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,319,428	-		Atu1333	0.19	-1.1
1,319,707	+		Atu1333	0.55	-0.6
1,319,820	-		Atu1333	0.70	-0.6
1,319,996	-				-0.6
1,320,026	+				-0.6
1,320,071	+				-0.8
1,320,089	-				+0.0
1,320,148	+				+0.1
1,320,179	-				-0.4
1,320,207	-				+1.8
1,320,343	+		Atu1334	0.11	-0.3
1,320,420	+		Atu1334	0.17	+0.1
1,320,420	+		Atu1334	0.17	+0.1
1,320,515	+		Atu1334	0.26	+0.3
1,320,755	-		Atu1334	0.46	-0.9
1,320,884	+		Atu1334	0.57	-0.8
1,320,956	+		Atu1334	0.63	+0.3
1,320,960	+		Atu1334	0.64	-0.2
1,321,007	-		Atu1334	0.68	-1.0
1,321,087	+		Atu1334	0.75	+0.5
1,321,432	-				+0.2
1,321,438	-				-0.3
1,321,474	-				-0.4
1,321,474	-				+0.0
1,321,515	-		Atu1335	0.15	+0.1
1,321,523	-		Atu1335	0.17	-0.5
1,321,525	+		Atu1335	0.17	-0.2
1,321,533	-		Atu1335	0.18	-0.3
1,321,578	-		Atu1335	0.25	+0.5
1,321,578	-		Atu1335	0.25	+0.9
1,321,578	-		Atu1335	0.25	-0.2
1,321,652	+		Atu1335	0.36	-0.0
1,321,688	+		Atu1335	0.41	+1.3
1,321,776	+		Atu1335	0.54	+2.4
1,321,776	+		Atu1335	0.54	-0.1
1,321,784	-		Atu1335	0.55	+0.4
1,321,813	-		Atu1335	0.59	+1.2
1,321,822	+		Atu1335	0.60	-0.8
1,321,978	-		Atu1335	0.83	-0.0
1,322,030	-				-2.1
1,322,054	-				-0.4
1,322,054	-				-0.2
1,322,271	+		Atu1336	0.32	-0.5
1,322,272	-		Atu1336	0.32	-2.1
1,322,274	-		Atu1336	0.33	+1.1
1,322,321	-		Atu1336	0.47	-0.8
1,322,364	-		Atu1336	0.60	-0.9