Strain Fitness in Agrobacterium fabrum C58 around Atu1033

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,025,213	-		Atu1031	0.86	+0.5
1,025,216	+		Atu1031	0.88	-1.2
1,025,247	+				-0.9
1,025,255	-				+0.3
1,025,257	+				+0.0
1,025,318	-				+0.8
1,025,337	+				+0.2
1,025,391	+				+0.1
1,025,567	-		Atu1032	0.11	+1.8
1,025,849	+		Atu1032	0.59	-0.4
1,025,855	+		Atu1032	0.60	+0.7
1,025,883	+		Atu1032	0.65	-0.3
1,025,891	-		Atu1032	0.66	+0.3
1,025,891	-		Atu1032	0.66	-0.6
1,025,915	-		Atu1032	0.71	-0.4
1,025,937	-		Atu1032	0.74	+0.4
1,025,955	-		Atu1032	0.78	+0.7
1,026,003	-		Atu1032	0.86	-0.4
1,027,427	+				-0.3
1,027,427	+				-1.7
1,027,427	+				+0.6