Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0860 and Atu0861 are separated by 40 nucleotides Atu0861 and Atu0862 are separated by 88 nucleotides Atu0862 and Atu0863 are separated by 7 nucleotides Atu0863 and Atu0864 are separated by 103 nucleotides Atu0864 and Atu0865 are separated by 72 nucleotides
Atu0860: Atu0860 - hypothetical protein, at 858,363 to 859,925
Atu0860
Atu0861: Atu0861 - hypothetical protein, at 859,966 to 860,151
Atu0861
Atu0862: Atu0862 - hypothetical protein, at 860,240 to 860,635
Atu0862
Atu0863: Atu0863 - hypothetical protein, at 860,643 to 861,074
Atu0863
Atu0864: Atu0864 - oxidoreductase, at 861,178 to 861,936
Atu0864
Atu0865: Atu0865 - transcriptional regulator, AraC family, at 862,009 to 862,815
Atu0865
Position (kb) 860
861
862 Strain fitness (log2 ratio) -2
-1
0
1 at 859.692 kb on + strand, within Atu0860 at 859.723 kb on - strand, within Atu0860 at 859.792 kb on + strand at 859.792 kb on + strand at 859.818 kb on + strand at 859.875 kb on + strand at 859.900 kb on + strand at 859.925 kb on - strand at 860.025 kb on - strand, within Atu0861 at 860.053 kb on + strand, within Atu0861 at 860.146 kb on + strand at 860.154 kb on - strand at 860.283 kb on + strand, within Atu0862 at 860.291 kb on - strand, within Atu0862 at 860.291 kb on - strand, within Atu0862 at 860.404 kb on + strand, within Atu0862 at 860.404 kb on + strand, within Atu0862 at 860.404 kb on + strand, within Atu0862 at 860.412 kb on - strand, within Atu0862 at 860.412 kb on - strand, within Atu0862 at 860.412 kb on - strand, within Atu0862 at 860.412 kb on - strand, within Atu0862 at 860.412 kb on - strand, within Atu0862 at 860.539 kb on + strand, within Atu0862 at 860.612 kb on - strand at 860.616 kb on + strand at 860.626 kb on + strand at 860.724 kb on + strand, within Atu0863 at 860.732 kb on - strand, within Atu0863 at 860.742 kb on - strand, within Atu0863 at 860.759 kb on + strand, within Atu0863 at 860.760 kb on + strand, within Atu0863 at 860.762 kb on + strand, within Atu0863 at 860.865 kb on + strand, within Atu0863 at 860.982 kb on - strand, within Atu0863 at 861.029 kb on - strand, within Atu0863 at 861.048 kb on + strand at 861.050 kb on - strand at 861.081 kb on - strand at 861.228 kb on + strand at 861.228 kb on + strand at 861.231 kb on - strand at 861.343 kb on - strand, within Atu0864 at 861.350 kb on - strand, within Atu0864 at 861.393 kb on + strand, within Atu0864 at 861.399 kb on + strand, within Atu0864 at 861.401 kb on - strand, within Atu0864 at 861.419 kb on - strand, within Atu0864 at 861.477 kb on + strand, within Atu0864 at 861.479 kb on - strand, within Atu0864 at 861.616 kb on + strand, within Atu0864 at 861.616 kb on + strand, within Atu0864 at 861.738 kb on - strand, within Atu0864 at 861.743 kb on - strand, within Atu0864 at 861.762 kb on - strand, within Atu0864 at 861.762 kb on - strand, within Atu0864 at 861.773 kb on + strand, within Atu0864 at 861.790 kb on + strand, within Atu0864 at 861.930 kb on + strand at 861.930 kb on + strand at 861.930 kb on + strand at 861.930 kb on + strand at 861.938 kb on - strand at 861.938 kb on - strand at 861.938 kb on - strand at 862.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 859,692 + Atu0860 0.85 -0.1 859,723 - Atu0860 0.87 +0.0 859,792 + -0.4 859,792 + -1.2 859,818 + +1.2 859,875 + +1.1 859,900 + -0.6 859,925 - +0.3 860,025 - Atu0861 0.32 -0.3 860,053 + Atu0861 0.47 -0.5 860,146 + +0.1 860,154 - +0.5 860,283 + Atu0862 0.11 -0.1 860,291 - Atu0862 0.13 +1.7 860,291 - Atu0862 0.13 +0.2 860,404 + Atu0862 0.41 +0.7 860,404 + Atu0862 0.41 -0.7 860,404 + Atu0862 0.41 -0.1 860,412 - Atu0862 0.43 +0.2 860,412 - Atu0862 0.43 +1.1 860,412 - Atu0862 0.43 +1.1 860,412 - Atu0862 0.43 -1.3 860,412 - Atu0862 0.43 +0.0 860,539 + Atu0862 0.76 +0.7 860,612 - +1.2 860,616 + +0.2 860,626 + -0.3 860,724 + Atu0863 0.19 +0.1 860,732 - Atu0863 0.21 +0.7 860,742 - Atu0863 0.23 +0.3 860,759 + Atu0863 0.27 -0.3 860,760 + Atu0863 0.27 +0.7 860,762 + Atu0863 0.28 +1.7 860,865 + Atu0863 0.51 -0.5 860,982 - Atu0863 0.78 +0.3 861,029 - Atu0863 0.89 +0.5 861,048 + -0.2 861,050 - +0.3 861,081 - +0.7 861,228 + +0.1 861,228 + -0.1 861,231 - -0.2 861,343 - Atu0864 0.22 +0.6 861,350 - Atu0864 0.23 -0.1 861,393 + Atu0864 0.28 +0.2 861,399 + Atu0864 0.29 +0.8 861,401 - Atu0864 0.29 +0.1 861,419 - Atu0864 0.32 +0.1 861,477 + Atu0864 0.39 -0.3 861,479 - Atu0864 0.40 -1.5 861,616 + Atu0864 0.58 +0.2 861,616 + Atu0864 0.58 -0.0 861,738 - Atu0864 0.74 -2.0 861,743 - Atu0864 0.74 -0.8 861,762 - Atu0864 0.77 +0.1 861,762 - Atu0864 0.77 -0.4 861,773 + Atu0864 0.78 -0.2 861,790 + Atu0864 0.81 +0.7 861,930 + +0.3 861,930 + +0.0 861,930 + -0.1 861,930 + -0.2 861,938 - +0.2 861,938 - -0.6 861,938 - -0.9 862,052 + +0.6
Or see this region's nucleotide sequence