Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0282 and Atu0283 overlap by 4 nucleotides Atu0283 and Atu0284 are separated by 78 nucleotides Atu0284 and Atu0285 are separated by 50 nucleotides
Atu0282: Atu0282 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 276,734 to 277,372
Atu0282
Atu0283: Atu0283 - hypothetical protein, at 277,369 to 277,818
Atu0283
Atu0284: Atu0284 - tryptophan-rich sensory protein, at 277,897 to 278,349
Atu0284
Atu0285: Atu0285 - hypothetical protein, at 278,400 to 279,494
Atu0285
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 276.906 kb on + strand, within Atu0282 at 276.957 kb on + strand, within Atu0282 at 276.963 kb on - strand, within Atu0282 at 276.965 kb on - strand, within Atu0282 at 277.130 kb on + strand, within Atu0282 at 277.273 kb on - strand, within Atu0282 at 277.273 kb on - strand, within Atu0282 at 277.409 kb on - strand at 277.452 kb on + strand, within Atu0283 at 277.452 kb on + strand, within Atu0283 at 277.452 kb on + strand, within Atu0283 at 277.460 kb on - strand, within Atu0283 at 277.460 kb on - strand, within Atu0283 at 277.460 kb on - strand, within Atu0283 at 277.460 kb on - strand, within Atu0283 at 277.548 kb on + strand, within Atu0283 at 277.567 kb on + strand, within Atu0283 at 277.579 kb on + strand, within Atu0283 at 277.662 kb on - strand, within Atu0283 at 277.695 kb on + strand, within Atu0283 at 277.703 kb on - strand, within Atu0283 at 277.749 kb on + strand, within Atu0283 at 277.752 kb on - strand, within Atu0283 at 277.823 kb on - strand at 277.834 kb on + strand at 277.842 kb on - strand at 277.854 kb on + strand at 277.867 kb on + strand at 277.873 kb on + strand at 277.877 kb on + strand at 277.900 kb on + strand at 277.908 kb on + strand at 277.908 kb on - strand at 277.927 kb on - strand at 277.950 kb on + strand, within Atu0284 at 277.951 kb on + strand, within Atu0284 at 277.951 kb on + strand, within Atu0284 at 277.951 kb on + strand, within Atu0284 at 277.959 kb on - strand, within Atu0284 at 277.993 kb on + strand, within Atu0284 at 277.996 kb on + strand, within Atu0284 at 278.036 kb on - strand, within Atu0284 at 278.117 kb on + strand, within Atu0284 at 278.119 kb on + strand, within Atu0284 at 278.125 kb on - strand, within Atu0284 at 278.126 kb on - strand, within Atu0284 at 278.198 kb on + strand, within Atu0284 at 278.201 kb on - strand, within Atu0284 at 278.206 kb on - strand, within Atu0284 at 278.419 kb on - strand at 278.421 kb on + strand at 278.433 kb on + strand at 278.488 kb on - strand at 278.509 kb on - strand at 278.592 kb on + strand, within Atu0285 at 278.609 kb on - strand, within Atu0285 at 278.619 kb on + strand, within Atu0285 at 278.690 kb on + strand, within Atu0285 at 278.692 kb on + strand, within Atu0285 at 278.692 kb on + strand, within Atu0285 at 278.700 kb on - strand, within Atu0285 at 278.700 kb on - strand, within Atu0285 at 278.700 kb on - strand, within Atu0285 at 278.751 kb on - strand, within Atu0285 at 278.826 kb on + strand, within Atu0285 at 278.836 kb on + strand, within Atu0285 at 278.890 kb on - strand, within Atu0285 at 279.001 kb on + strand, within Atu0285 at 279.026 kb on + strand, within Atu0285 at 279.054 kb on + strand, within Atu0285 at 279.101 kb on + strand, within Atu0285 at 279.101 kb on + strand, within Atu0285 at 279.174 kb on + strand, within Atu0285 at 279.174 kb on + strand, within Atu0285 at 279.238 kb on + strand, within Atu0285
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 276,906 + Atu0282 0.27 -0.2 276,957 + Atu0282 0.35 -0.2 276,963 - Atu0282 0.36 +0.2 276,965 - Atu0282 0.36 +0.7 277,130 + Atu0282 0.62 -0.5 277,273 - Atu0282 0.84 -0.7 277,273 - Atu0282 0.84 +0.4 277,409 - +0.1 277,452 + Atu0283 0.18 +0.1 277,452 + Atu0283 0.18 +0.3 277,452 + Atu0283 0.18 +0.8 277,460 - Atu0283 0.20 +0.5 277,460 - Atu0283 0.20 -0.5 277,460 - Atu0283 0.20 +1.4 277,460 - Atu0283 0.20 -1.2 277,548 + Atu0283 0.40 -0.3 277,567 + Atu0283 0.44 +0.2 277,579 + Atu0283 0.47 -0.3 277,662 - Atu0283 0.65 -0.2 277,695 + Atu0283 0.72 -0.2 277,703 - Atu0283 0.74 +0.3 277,749 + Atu0283 0.84 +0.3 277,752 - Atu0283 0.85 -0.2 277,823 - +0.7 277,834 + -0.2 277,842 - +0.1 277,854 + -0.8 277,867 + -0.3 277,873 + -1.1 277,877 + -0.4 277,900 + -0.1 277,908 + -0.1 277,908 - -0.6 277,927 - -0.6 277,950 + Atu0284 0.12 -0.4 277,951 + Atu0284 0.12 -1.0 277,951 + Atu0284 0.12 -0.3 277,951 + Atu0284 0.12 -2.2 277,959 - Atu0284 0.14 +0.0 277,993 + Atu0284 0.21 +0.1 277,996 + Atu0284 0.22 +0.1 278,036 - Atu0284 0.31 -0.6 278,117 + Atu0284 0.49 -0.7 278,119 + Atu0284 0.49 -1.1 278,125 - Atu0284 0.50 +0.1 278,126 - Atu0284 0.51 +0.4 278,198 + Atu0284 0.66 -0.2 278,201 - Atu0284 0.67 -0.7 278,206 - Atu0284 0.68 -0.7 278,419 - +0.5 278,421 + -3.3 278,433 + +0.6 278,488 - -0.9 278,509 - -0.6 278,592 + Atu0285 0.18 +0.4 278,609 - Atu0285 0.19 -1.3 278,619 + Atu0285 0.20 -0.5 278,690 + Atu0285 0.26 -1.2 278,692 + Atu0285 0.27 -0.2 278,692 + Atu0285 0.27 +0.2 278,700 - Atu0285 0.27 -0.1 278,700 - Atu0285 0.27 +0.5 278,700 - Atu0285 0.27 +0.2 278,751 - Atu0285 0.32 -0.1 278,826 + Atu0285 0.39 -0.1 278,836 + Atu0285 0.40 +0.4 278,890 - Atu0285 0.45 +0.9 279,001 + Atu0285 0.55 -0.2 279,026 + Atu0285 0.57 -0.0 279,054 + Atu0285 0.60 -0.8 279,101 + Atu0285 0.64 +0.8 279,101 + Atu0285 0.64 -0.8 279,174 + Atu0285 0.71 -0.1 279,174 + Atu0285 0.71 +2.1 279,238 + Atu0285 0.77 -0.8
Or see this region's nucleotide sequence