Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0278 and Atu0279 overlap by 2 nucleotides Atu0279 and Atu0280 are separated by 141 nucleotides Atu0280 and Atu0281 are separated by 74 nucleotides
Atu0278: Atu0278 - hypothetical protein, at 272,904 to 273,791
Atu0278
Atu0279: Atu0279 - transcriptional regulator, TetR family, at 273,790 to 274,368
Atu0279
Atu0280: Atu0280 - hypothetical protein, at 274,510 to 274,998
Atu0280
Atu0281: Atu0281 - GMP synthase, at 275,073 to 276,650
Atu0281
Position (kb) 274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 273.510 kb on + strand, within Atu0278 at 273.584 kb on + strand, within Atu0278 at 273.609 kb on + strand, within Atu0278 at 273.635 kb on - strand, within Atu0278 at 273.639 kb on + strand, within Atu0278 at 273.737 kb on + strand at 273.799 kb on + strand at 273.833 kb on + strand at 273.843 kb on + strand at 273.843 kb on + strand at 273.843 kb on + strand at 273.856 kb on + strand, within Atu0279 at 273.856 kb on + strand, within Atu0279 at 273.948 kb on + strand, within Atu0279 at 274.145 kb on + strand, within Atu0279 at 274.208 kb on + strand, within Atu0279 at 274.223 kb on + strand, within Atu0279 at 274.223 kb on + strand, within Atu0279 at 274.248 kb on + strand, within Atu0279 at 274.248 kb on + strand, within Atu0279 at 274.248 kb on + strand, within Atu0279 at 274.278 kb on + strand, within Atu0279 at 274.283 kb on + strand, within Atu0279 at 274.353 kb on + strand at 274.361 kb on - strand at 274.376 kb on - strand at 274.433 kb on - strand at 274.446 kb on + strand at 274.544 kb on - strand at 274.663 kb on - strand, within Atu0280 at 274.791 kb on - strand, within Atu0280 at 274.861 kb on - strand, within Atu0280 at 274.882 kb on + strand, within Atu0280 at 275.019 kb on - strand at 275.019 kb on - strand at 275.023 kb on + strand at 275.023 kb on + strand at 275.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 273,510 + Atu0278 0.68 -0.2 273,584 + Atu0278 0.77 -3.2 273,609 + Atu0278 0.79 -0.1 273,635 - Atu0278 0.82 +0.4 273,639 + Atu0278 0.83 +0.3 273,737 + -0.0 273,799 + -0.6 273,833 + +0.4 273,843 + +1.8 273,843 + +1.2 273,843 + -0.7 273,856 + Atu0279 0.11 -1.8 273,856 + Atu0279 0.11 +0.5 273,948 + Atu0279 0.27 +0.3 274,145 + Atu0279 0.61 -1.0 274,208 + Atu0279 0.72 +0.0 274,223 + Atu0279 0.75 +0.7 274,223 + Atu0279 0.75 -1.3 274,248 + Atu0279 0.79 +1.1 274,248 + Atu0279 0.79 +0.1 274,248 + Atu0279 0.79 -0.0 274,278 + Atu0279 0.84 -0.4 274,283 + Atu0279 0.85 -1.4 274,353 + -1.2 274,361 - +0.4 274,376 - -0.4 274,433 - -0.5 274,446 + +0.1 274,544 - -0.5 274,663 - Atu0280 0.31 +0.3 274,791 - Atu0280 0.57 -0.1 274,861 - Atu0280 0.72 -0.0 274,882 + Atu0280 0.76 -0.2 275,019 - +0.3 275,019 - -0.8 275,023 + +0.5 275,023 + +0.3 275,035 + -1.0
Or see this region's nucleotide sequence