Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0261 and Atu0262 are separated by 0 nucleotides Atu0262 and Atu0263 are separated by 1 nucleotides
Atu0261: Atu0261 - transcriptional regulator, LysR family, at 259,145 to 260,035
Atu0261
Atu0262: Atu0262 - acetyltransferase, at 260,036 to 260,479
Atu0262
Atu0263: Atu0263 - oxidoreductase, at 260,481 to 261,431
Atu0263
Position (kb) 260
261 Strain fitness (log2 ratio) -1
0
1
2 at 259.223 kb on + strand at 259.274 kb on - strand, within Atu0261 at 259.286 kb on - strand, within Atu0261 at 259.432 kb on + strand, within Atu0261 at 259.439 kb on + strand, within Atu0261 at 259.473 kb on + strand, within Atu0261 at 259.492 kb on + strand, within Atu0261 at 259.750 kb on - strand, within Atu0261 at 259.750 kb on - strand, within Atu0261 at 259.828 kb on - strand, within Atu0261 at 259.835 kb on - strand, within Atu0261 at 259.862 kb on - strand, within Atu0261 at 259.889 kb on + strand, within Atu0261 at 259.933 kb on - strand, within Atu0261 at 259.991 kb on - strand at 259.997 kb on - strand at 260.135 kb on - strand, within Atu0262 at 260.142 kb on - strand, within Atu0262 at 260.152 kb on - strand, within Atu0262 at 260.152 kb on - strand, within Atu0262 at 260.152 kb on - strand, within Atu0262 at 260.250 kb on + strand, within Atu0262 at 260.258 kb on - strand, within Atu0262 at 260.494 kb on - strand at 260.494 kb on - strand at 260.496 kb on + strand at 260.505 kb on + strand at 260.533 kb on - strand at 260.614 kb on + strand, within Atu0263 at 260.614 kb on + strand, within Atu0263 at 260.622 kb on - strand, within Atu0263 at 260.622 kb on - strand, within Atu0263 at 260.644 kb on + strand, within Atu0263 at 260.644 kb on + strand, within Atu0263 at 260.649 kb on + strand, within Atu0263 at 260.657 kb on - strand, within Atu0263 at 260.657 kb on - strand, within Atu0263 at 260.870 kb on + strand, within Atu0263 at 260.878 kb on - strand, within Atu0263 at 260.891 kb on - strand, within Atu0263 at 261.279 kb on - strand, within Atu0263 at 261.332 kb on - strand, within Atu0263 at 261.355 kb on + strand at 261.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 259,223 + +0.2 259,274 - Atu0261 0.14 +0.1 259,286 - Atu0261 0.16 -0.7 259,432 + Atu0261 0.32 -0.3 259,439 + Atu0261 0.33 -0.1 259,473 + Atu0261 0.37 -0.9 259,492 + Atu0261 0.39 +0.2 259,750 - Atu0261 0.68 -0.6 259,750 - Atu0261 0.68 +0.4 259,828 - Atu0261 0.77 +0.2 259,835 - Atu0261 0.77 -0.3 259,862 - Atu0261 0.80 -0.3 259,889 + Atu0261 0.84 +0.1 259,933 - Atu0261 0.88 -0.0 259,991 - -1.0 259,997 - -0.6 260,135 - Atu0262 0.22 -0.2 260,142 - Atu0262 0.24 +0.1 260,152 - Atu0262 0.26 +2.7 260,152 - Atu0262 0.26 +0.5 260,152 - Atu0262 0.26 +0.2 260,250 + Atu0262 0.48 +1.3 260,258 - Atu0262 0.50 +0.7 260,494 - -0.4 260,494 - -0.4 260,496 + -0.5 260,505 + -0.4 260,533 - -0.3 260,614 + Atu0263 0.14 -0.1 260,614 + Atu0263 0.14 +0.9 260,622 - Atu0263 0.15 +0.4 260,622 - Atu0263 0.15 -0.0 260,644 + Atu0263 0.17 -0.5 260,644 + Atu0263 0.17 +0.1 260,649 + Atu0263 0.18 +0.3 260,657 - Atu0263 0.19 +0.7 260,657 - Atu0263 0.19 +0.3 260,870 + Atu0263 0.41 -0.3 260,878 - Atu0263 0.42 -0.5 260,891 - Atu0263 0.43 -0.4 261,279 - Atu0263 0.84 +0.0 261,332 - Atu0263 0.89 -0.9 261,355 + -0.2 261,418 - +1.0
Or see this region's nucleotide sequence