Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0141 and Atu0142 are separated by 76 nucleotides Atu0142 and Atu0143 are separated by 380 nucleotides
Atu0141: Atu0141 - cytochrome O ubiquinol oxidase subunit I, at 143,594 to 145,597
Atu0141
Atu0142: Atu0142 - cytochrome o ubiquinol oxidase subunit II, at 145,674 to 146,672
Atu0142
Atu0143: Atu0143 - MFS permease, at 147,053 to 148,375
Atu0143
Position (kb) 145
146
147 Strain fitness (log2 ratio) -2
-1
0
1 at 144.754 kb on - strand, within Atu0141 at 145.458 kb on - strand at 145.492 kb on + strand at 145.808 kb on - strand, within Atu0142 at 146.054 kb on + strand, within Atu0142 at 146.179 kb on + strand, within Atu0142 at 146.446 kb on + strand, within Atu0142 at 146.604 kb on - strand at 146.772 kb on + strand at 146.780 kb on - strand at 146.871 kb on + strand at 146.871 kb on + strand at 146.879 kb on - strand at 146.879 kb on - strand at 146.886 kb on - strand at 146.920 kb on + strand at 146.992 kb on - strand at 147.005 kb on + strand at 147.078 kb on + strand at 147.079 kb on - strand at 147.098 kb on - strand at 147.098 kb on - strand at 147.110 kb on + strand at 147.110 kb on + strand at 147.260 kb on + strand, within Atu0143 at 147.260 kb on + strand, within Atu0143 at 147.267 kb on - strand, within Atu0143 at 147.478 kb on - strand, within Atu0143 at 147.485 kb on - strand, within Atu0143 at 147.502 kb on - strand, within Atu0143 at 147.504 kb on + strand, within Atu0143 at 147.504 kb on + strand, within Atu0143 at 147.512 kb on - strand, within Atu0143 at 147.512 kb on - strand, within Atu0143 at 147.581 kb on + strand, within Atu0143 at 147.584 kb on - strand, within Atu0143 at 147.589 kb on + strand, within Atu0143 at 147.606 kb on - strand, within Atu0143 at 147.631 kb on + strand, within Atu0143 at 147.649 kb on - strand, within Atu0143 at 147.658 kb on + strand, within Atu0143
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 144,754 - Atu0141 0.58 -0.0 145,458 - -0.4 145,492 + -0.8 145,808 - Atu0142 0.13 -1.9 146,054 + Atu0142 0.38 -1.4 146,179 + Atu0142 0.51 -1.0 146,446 + Atu0142 0.77 -0.0 146,604 - +0.6 146,772 + -0.0 146,780 - +0.5 146,871 + +0.4 146,871 + -0.0 146,879 - -0.9 146,879 - +0.6 146,886 - +0.1 146,920 + -0.2 146,992 - -0.6 147,005 + -0.7 147,078 + -0.2 147,079 - +0.1 147,098 - +0.2 147,098 - +0.5 147,110 + -1.3 147,110 + -0.1 147,260 + Atu0143 0.16 -0.4 147,260 + Atu0143 0.16 -0.7 147,267 - Atu0143 0.16 -1.0 147,478 - Atu0143 0.32 -0.1 147,485 - Atu0143 0.33 -0.2 147,502 - Atu0143 0.34 +0.1 147,504 + Atu0143 0.34 +0.9 147,504 + Atu0143 0.34 +1.3 147,512 - Atu0143 0.35 -0.5 147,512 - Atu0143 0.35 +0.3 147,581 + Atu0143 0.40 -0.4 147,584 - Atu0143 0.40 +0.6 147,589 + Atu0143 0.41 -0.7 147,606 - Atu0143 0.42 +0.0 147,631 + Atu0143 0.44 -1.8 147,649 - Atu0143 0.45 -0.7 147,658 + Atu0143 0.46 -0.0
Or see this region's nucleotide sequence