Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0130 and Atu0131 overlap by 1 nucleotides Atu0131 and Atu0132 are separated by 2 nucleotides Atu0132 and Atu0133 overlap by 4 nucleotides
Atu0130: Atu0130 - cytidine deaminase, at 134,652 to 135,056
Atu0130
Atu0131: Atu0131 - purine nucleoside phosphorylase, at 135,056 to 135,856
Atu0131
Atu0132: Atu0132 - 2-deoxyribose-5-phosphate aldolase, at 135,859 to 136,632
Atu0132
Atu0133: Atu0133 - thymidine phosphorylase, at 136,629 to 137,945
Atu0133
Position (kb) 135
136
137 Strain fitness (log2 ratio) -1
0
1
2
3 at 134.860 kb on - strand, within Atu0130 at 135.035 kb on + strand at 135.048 kb on - strand at 135.063 kb on - strand at 135.099 kb on + strand at 135.107 kb on - strand at 135.107 kb on - strand at 135.130 kb on - strand at 135.130 kb on - strand at 135.183 kb on + strand, within Atu0131 at 135.238 kb on + strand, within Atu0131 at 135.266 kb on + strand, within Atu0131 at 135.363 kb on + strand, within Atu0131 at 135.521 kb on + strand, within Atu0131 at 135.656 kb on - strand, within Atu0131 at 135.764 kb on + strand, within Atu0131 at 135.764 kb on + strand, within Atu0131 at 135.772 kb on - strand, within Atu0131 at 135.772 kb on - strand, within Atu0131 at 135.815 kb on - strand at 135.864 kb on + strand at 135.913 kb on - strand at 135.920 kb on + strand at 135.938 kb on - strand, within Atu0132 at 136.032 kb on - strand, within Atu0132 at 136.037 kb on - strand, within Atu0132 at 136.075 kb on - strand, within Atu0132 at 136.135 kb on + strand, within Atu0132 at 136.221 kb on + strand, within Atu0132 at 136.233 kb on + strand, within Atu0132 at 136.293 kb on + strand, within Atu0132 at 136.308 kb on - strand, within Atu0132 at 136.349 kb on - strand, within Atu0132 at 136.430 kb on + strand, within Atu0132 at 136.495 kb on - strand, within Atu0132 at 136.497 kb on - strand, within Atu0132 at 136.524 kb on + strand, within Atu0132 at 136.524 kb on + strand, within Atu0132 at 136.893 kb on + strand, within Atu0133 at 136.909 kb on - strand, within Atu0133 at 137.032 kb on + strand, within Atu0133 at 137.123 kb on + strand, within Atu0133 at 137.263 kb on + strand, within Atu0133 at 137.263 kb on + strand, within Atu0133 at 137.334 kb on + strand, within Atu0133 at 137.419 kb on + strand, within Atu0133 at 137.436 kb on + strand, within Atu0133 at 137.451 kb on + strand, within Atu0133 at 137.451 kb on + strand, within Atu0133 at 137.530 kb on - strand, within Atu0133
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 134,860 - Atu0130 0.51 -0.6 135,035 + -0.0 135,048 - -0.6 135,063 - +2.8 135,099 + -0.4 135,107 - +0.9 135,107 - +0.2 135,130 - -0.0 135,130 - +0.2 135,183 + Atu0131 0.16 -0.5 135,238 + Atu0131 0.23 +0.3 135,266 + Atu0131 0.26 +0.2 135,363 + Atu0131 0.38 +1.1 135,521 + Atu0131 0.58 -0.4 135,656 - Atu0131 0.75 +0.4 135,764 + Atu0131 0.88 +1.3 135,764 + Atu0131 0.88 +0.6 135,772 - Atu0131 0.89 -0.5 135,772 - Atu0131 0.89 +0.4 135,815 - +0.3 135,864 + -0.4 135,913 - +0.2 135,920 + -1.5 135,938 - Atu0132 0.10 -0.5 136,032 - Atu0132 0.22 -0.2 136,037 - Atu0132 0.23 +1.1 136,075 - Atu0132 0.28 +0.3 136,135 + Atu0132 0.36 +1.1 136,221 + Atu0132 0.47 -0.6 136,233 + Atu0132 0.48 -0.5 136,293 + Atu0132 0.56 -0.6 136,308 - Atu0132 0.58 +2.6 136,349 - Atu0132 0.63 +0.1 136,430 + Atu0132 0.74 -0.3 136,495 - Atu0132 0.82 -0.5 136,497 - Atu0132 0.82 -0.3 136,524 + Atu0132 0.86 -0.2 136,524 + Atu0132 0.86 +0.3 136,893 + Atu0133 0.20 +0.1 136,909 - Atu0133 0.21 -0.3 137,032 + Atu0133 0.31 +0.1 137,123 + Atu0133 0.38 -0.2 137,263 + Atu0133 0.48 +0.9 137,263 + Atu0133 0.48 +0.8 137,334 + Atu0133 0.54 +0.0 137,419 + Atu0133 0.60 +1.4 137,436 + Atu0133 0.61 +1.1 137,451 + Atu0133 0.62 -0.3 137,451 + Atu0133 0.62 -0.1 137,530 - Atu0133 0.68 -0.2
Or see this region's nucleotide sequence