Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6166 and Atu6167 are separated by 544 nucleotides Atu6167 and Atu6168 overlap by 1 nucleotides Atu6168 and Atu6169 overlap by 1 nucleotides Atu6169 and Atu6170 overlap by 1 nucleotides
Atu6166: Atu6166 - two component sensor kinase, at 180,831 to 183,332
Atu6166
Atu6167: Atu6167 - component of type IV secretion system, at 183,877 to 184,614
Atu6167
Atu6168: Atu6168 - component of type IV secretion system, pilin subunit, at 184,614 to 184,979
Atu6168
Atu6169: Atu6169 - component of type IV secretion system, at 184,979 to 185,305
Atu6169
Atu6170: Atu6170 - component of type IV secretion system, at 185,305 to 187,674
Atu6170
Position (kb) 183
184
185 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 182.877 kb on + strand, within Atu6166 at 182.891 kb on - strand, within Atu6166 at 182.946 kb on - strand, within Atu6166 at 182.960 kb on + strand, within Atu6166 at 182.960 kb on + strand, within Atu6166 at 182.962 kb on + strand, within Atu6166 at 182.962 kb on + strand, within Atu6166 at 182.962 kb on + strand, within Atu6166 at 182.962 kb on + strand, within Atu6166 at 182.962 kb on + strand, within Atu6166 at 182.968 kb on - strand, within Atu6166 at 182.968 kb on - strand, within Atu6166 at 182.968 kb on - strand, within Atu6166 at 182.968 kb on - strand, within Atu6166 at 182.968 kb on - strand, within Atu6166 at 182.968 kb on - strand, within Atu6166 at 182.968 kb on - strand, within Atu6166 at 182.999 kb on + strand, within Atu6166 at 183.005 kb on + strand, within Atu6166 at 183.010 kb on + strand, within Atu6166 at 183.020 kb on + strand, within Atu6166 at 183.027 kb on - strand, within Atu6166 at 183.048 kb on + strand, within Atu6166 at 183.073 kb on - strand, within Atu6166 at 183.082 kb on + strand at 183.090 kb on - strand at 183.090 kb on - strand at 183.090 kb on - strand at 183.090 kb on - strand at 183.174 kb on + strand at 183.174 kb on + strand at 183.186 kb on + strand at 183.186 kb on + strand at 183.196 kb on - strand at 183.196 kb on - strand at 183.277 kb on + strand at 183.287 kb on - strand at 183.307 kb on - strand at 183.335 kb on - strand at 183.376 kb on + strand at 183.384 kb on - strand at 183.391 kb on + strand at 183.460 kb on + strand at 183.462 kb on - strand at 183.508 kb on + strand at 183.516 kb on - strand at 183.516 kb on - strand at 183.591 kb on + strand at 183.591 kb on + strand at 183.599 kb on - strand at 183.677 kb on - strand at 183.716 kb on + strand at 183.716 kb on + strand at 183.716 kb on + strand at 183.716 kb on + strand at 183.716 kb on + strand at 183.716 kb on + strand at 183.716 kb on + strand at 183.716 kb on + strand at 183.723 kb on - strand at 183.723 kb on - strand at 183.724 kb on - strand at 183.724 kb on - strand at 183.724 kb on - strand at 183.724 kb on - strand at 183.724 kb on - strand at 183.724 kb on - strand at 183.724 kb on - strand at 183.724 kb on - strand at 183.794 kb on - strand at 183.811 kb on + strand at 183.819 kb on - strand at 183.837 kb on - strand at 183.847 kb on + strand at 183.859 kb on + strand at 183.861 kb on - strand at 183.868 kb on - strand at 183.872 kb on + strand at 183.900 kb on + strand at 183.915 kb on + strand at 183.941 kb on - strand at 183.946 kb on - strand at 183.995 kb on + strand, within Atu6167 at 184.003 kb on - strand, within Atu6167 at 184.008 kb on - strand, within Atu6167 at 184.029 kb on + strand, within Atu6167 at 184.037 kb on - strand, within Atu6167 at 184.048 kb on - strand, within Atu6167 at 184.048 kb on - strand, within Atu6167 at 184.053 kb on - strand, within Atu6167 at 184.065 kb on - strand, within Atu6167 at 184.065 kb on - strand, within Atu6167 at 184.120 kb on + strand, within Atu6167 at 184.124 kb on - strand, within Atu6167 at 184.156 kb on - strand, within Atu6167 at 184.160 kb on + strand, within Atu6167 at 184.160 kb on + strand, within Atu6167 at 184.207 kb on - strand, within Atu6167 at 184.207 kb on - strand, within Atu6167 at 184.218 kb on + strand, within Atu6167 at 184.224 kb on + strand, within Atu6167 at 184.225 kb on - strand, within Atu6167 at 184.227 kb on - strand, within Atu6167 at 184.266 kb on + strand, within Atu6167 at 184.284 kb on - strand, within Atu6167 at 184.355 kb on + strand, within Atu6167 at 184.355 kb on + strand, within Atu6167 at 184.391 kb on + strand, within Atu6167 at 184.418 kb on - strand, within Atu6167 at 184.454 kb on - strand, within Atu6167 at 184.488 kb on - strand, within Atu6167 at 184.503 kb on + strand, within Atu6167 at 184.503 kb on + strand, within Atu6167 at 184.511 kb on - strand, within Atu6167 at 184.578 kb on + strand at 184.676 kb on + strand, within Atu6168 at 184.679 kb on - strand, within Atu6168 at 184.679 kb on - strand, within Atu6168 at 184.683 kb on + strand, within Atu6168 at 184.683 kb on + strand, within Atu6168 at 184.683 kb on + strand, within Atu6168 at 184.709 kb on - strand, within Atu6168 at 184.711 kb on + strand, within Atu6168 at 184.711 kb on + strand, within Atu6168 at 184.711 kb on + strand, within Atu6168 at 184.711 kb on + strand, within Atu6168 at 184.719 kb on - strand, within Atu6168 at 184.719 kb on - strand, within Atu6168 at 184.719 kb on - strand, within Atu6168 at 184.722 kb on - strand, within Atu6168 at 184.735 kb on + strand, within Atu6168 at 184.776 kb on + strand, within Atu6168 at 184.784 kb on - strand, within Atu6168 at 184.791 kb on - strand, within Atu6168 at 184.807 kb on + strand, within Atu6168 at 184.807 kb on + strand, within Atu6168 at 184.842 kb on + strand, within Atu6168 at 184.964 kb on + strand at 184.972 kb on - strand at 185.006 kb on - strand at 185.116 kb on + strand, within Atu6169 at 185.129 kb on + strand, within Atu6169 at 185.129 kb on + strand, within Atu6169 at 185.221 kb on - strand, within Atu6169 at 185.221 kb on - strand, within Atu6169 at 185.236 kb on + strand, within Atu6169 at 185.236 kb on + strand, within Atu6169 at 185.247 kb on + strand, within Atu6169 at 185.255 kb on - strand, within Atu6169 at 185.295 kb on - strand at 185.307 kb on + strand at 185.326 kb on + strand at 185.334 kb on - strand at 185.338 kb on + strand at 185.341 kb on - strand at 185.341 kb on - strand at 185.341 kb on - strand at 185.346 kb on - strand at 185.362 kb on + strand at 185.362 kb on - strand at 185.377 kb on - strand at 185.384 kb on - strand at 185.427 kb on + strand at 185.543 kb on - strand, within Atu6170
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 remove 182,877 + Atu6166 0.82 +1.9 182,891 - Atu6166 0.82 +1.7 182,946 - Atu6166 0.85 +1.3 182,960 + Atu6166 0.85 +2.0 182,960 + Atu6166 0.85 +1.5 182,962 + Atu6166 0.85 -1.8 182,962 + Atu6166 0.85 -1.4 182,962 + Atu6166 0.85 +2.3 182,962 + Atu6166 0.85 -1.5 182,962 + Atu6166 0.85 -1.4 182,968 - Atu6166 0.85 +1.5 182,968 - Atu6166 0.85 +1.7 182,968 - Atu6166 0.85 +0.1 182,968 - Atu6166 0.85 +1.6 182,968 - Atu6166 0.85 +1.1 182,968 - Atu6166 0.85 +1.6 182,968 - Atu6166 0.85 +1.1 182,999 + Atu6166 0.87 +0.9 183,005 + Atu6166 0.87 +2.0 183,010 + Atu6166 0.87 +1.4 183,020 + Atu6166 0.87 +1.8 183,027 - Atu6166 0.88 -0.3 183,048 + Atu6166 0.89 +1.7 183,073 - Atu6166 0.90 +1.9 183,082 + +1.7 183,090 - +2.4 183,090 - +1.6 183,090 - +1.4 183,090 - +1.8 183,174 + +2.0 183,174 + -0.4 183,186 + +1.6 183,186 + +1.8 183,196 - +1.6 183,196 - +2.1 183,277 + +1.3 183,287 - +0.5 183,307 - +2.6 183,335 - +0.1 183,376 + -0.5 183,384 - +0.3 183,391 + +1.1 183,460 + +0.4 183,462 - +0.7 183,508 + +1.5 183,516 - -0.3 183,516 - -0.2 183,591 + -0.6 183,591 + -0.5 183,599 - -1.4 183,677 - -0.0 183,716 + -1.2 183,716 + -1.1 183,716 + +1.0 183,716 + -0.3 183,716 + +0.9 183,716 + -0.4 183,716 + -0.8 183,716 + -0.3 183,723 - +0.3 183,723 - +0.6 183,724 - -1.2 183,724 - +0.4 183,724 - -0.4 183,724 - +0.3 183,724 - -0.1 183,724 - +0.2 183,724 - -0.4 183,724 - +0.8 183,794 - -0.1 183,811 + +0.3 183,819 - +1.3 183,837 - +0.7 183,847 + +1.1 183,859 + +0.5 183,861 - +0.9 183,868 - +0.4 183,872 + +1.0 183,900 + +1.2 183,915 + +0.3 183,941 - +1.3 183,946 - +0.9 183,995 + Atu6167 0.16 +0.9 184,003 - Atu6167 0.17 +1.3 184,008 - Atu6167 0.18 +1.4 184,029 + Atu6167 0.21 +0.9 184,037 - Atu6167 0.22 +1.4 184,048 - Atu6167 0.23 +0.5 184,048 - Atu6167 0.23 +0.6 184,053 - Atu6167 0.24 +1.2 184,065 - Atu6167 0.25 +0.6 184,065 - Atu6167 0.25 +0.1 184,120 + Atu6167 0.33 +0.9 184,124 - Atu6167 0.33 +1.3 184,156 - Atu6167 0.38 +1.7 184,160 + Atu6167 0.38 +1.4 184,160 + Atu6167 0.38 +0.8 184,207 - Atu6167 0.45 +0.4 184,207 - Atu6167 0.45 +3.2 184,218 + Atu6167 0.46 +1.3 184,224 + Atu6167 0.47 +2.1 184,225 - Atu6167 0.47 +1.1 184,227 - Atu6167 0.47 +1.6 184,266 + Atu6167 0.53 +1.5 184,284 - Atu6167 0.55 +0.7 184,355 + Atu6167 0.65 +1.0 184,355 + Atu6167 0.65 -0.2 184,391 + Atu6167 0.70 +0.7 184,418 - Atu6167 0.73 +0.7 184,454 - Atu6167 0.78 +0.9 184,488 - Atu6167 0.83 +1.0 184,503 + Atu6167 0.85 +0.8 184,503 + Atu6167 0.85 +0.8 184,511 - Atu6167 0.86 +0.9 184,578 + +1.0 184,676 + Atu6168 0.17 +0.4 184,679 - Atu6168 0.18 +0.5 184,679 - Atu6168 0.18 +1.5 184,683 + Atu6168 0.19 +0.8 184,683 + Atu6168 0.19 +1.2 184,683 + Atu6168 0.19 +0.6 184,709 - Atu6168 0.26 +0.6 184,711 + Atu6168 0.27 +0.4 184,711 + Atu6168 0.27 +0.8 184,711 + Atu6168 0.27 +1.0 184,711 + Atu6168 0.27 +0.4 184,719 - Atu6168 0.29 +1.5 184,719 - Atu6168 0.29 +1.5 184,719 - Atu6168 0.29 +1.4 184,722 - Atu6168 0.30 +0.4 184,735 + Atu6168 0.33 +1.2 184,776 + Atu6168 0.44 +0.3 184,784 - Atu6168 0.46 +1.8 184,791 - Atu6168 0.48 +1.1 184,807 + Atu6168 0.53 +1.1 184,807 + Atu6168 0.53 +0.2 184,842 + Atu6168 0.62 +1.2 184,964 + +0.5 184,972 - -0.4 185,006 - +0.1 185,116 + Atu6169 0.42 +0.8 185,129 + Atu6169 0.46 +0.6 185,129 + Atu6169 0.46 +0.4 185,221 - Atu6169 0.74 +0.4 185,221 - Atu6169 0.74 -0.1 185,236 + Atu6169 0.79 +0.5 185,236 + Atu6169 0.79 -1.5 185,247 + Atu6169 0.82 +0.7 185,255 - Atu6169 0.84 +0.6 185,295 - +0.7 185,307 + -0.4 185,326 + -0.1 185,334 - +1.2 185,338 + +0.8 185,341 - +0.3 185,341 - +0.2 185,341 - +0.6 185,346 - +0.2 185,362 + +0.0 185,362 - +0.5 185,377 - -0.1 185,384 - -0.1 185,427 + +0.9 185,543 - Atu6170 0.10 +0.1
Or see this region's nucleotide sequence