Strain Fitness in Agrobacterium fabrum C58 around Atu6017

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6016 and Atu6017 overlap by 4 nucleotidesAtu6017 and Atu6018 are separated by 76 nucleotides Atu6016: Atu6016 - ornithine cyclodeaminase, at 24,980 to 26,095 Atu6016 Atu6017: Atu6017 - NAD/NADP octopine/nopaline dehydrogenase, at 26,092 to 27,174 Atu6017 Atu6018: Atu6018 - arginase, at 27,251 to 28,225 Atu6018 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1at 25.156 kb on - strand, within Atu6016at 25.187 kb on + strand, within Atu6016at 25.195 kb on - strand, within Atu6016at 25.195 kb on - strand, within Atu6016at 25.195 kb on - strand, within Atu6016at 25.205 kb on - strand, within Atu6016at 25.232 kb on - strand, within Atu6016at 25.232 kb on - strand, within Atu6016at 25.272 kb on + strand, within Atu6016at 25.301 kb on + strand, within Atu6016at 25.309 kb on - strand, within Atu6016at 25.328 kb on - strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.374 kb on - strand, within Atu6016at 25.374 kb on - strand, within Atu6016at 25.383 kb on - strand, within Atu6016at 25.388 kb on + strand, within Atu6016at 25.401 kb on - strand, within Atu6016at 25.411 kb on + strand, within Atu6016at 25.425 kb on + strand, within Atu6016at 25.425 kb on + strand, within Atu6016at 25.464 kb on - strand, within Atu6016at 25.466 kb on + strand, within Atu6016at 25.485 kb on + strand, within Atu6016at 25.493 kb on + strand, within Atu6016at 25.495 kb on + strand, within Atu6016at 25.503 kb on - strand, within Atu6016at 25.525 kb on + strand, within Atu6016at 25.533 kb on - strand, within Atu6016at 25.560 kb on + strand, within Atu6016at 25.560 kb on + strand, within Atu6016at 25.565 kb on + strand, within Atu6016at 25.587 kb on + strand, within Atu6016at 25.608 kb on + strand, within Atu6016at 25.619 kb on - strand, within Atu6016at 25.621 kb on + strand, within Atu6016at 25.624 kb on - strand, within Atu6016at 25.655 kb on - strand, within Atu6016at 25.720 kb on + strand, within Atu6016at 25.762 kb on + strand, within Atu6016at 25.820 kb on + strand, within Atu6016at 25.828 kb on - strand, within Atu6016at 25.903 kb on + strand, within Atu6016at 25.958 kb on + strand, within Atu6016at 25.966 kb on - strand, within Atu6016at 26.004 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.027 kb on - strandat 26.043 kb on - strandat 26.052 kb on - strandat 26.055 kb on + strandat 26.076 kb on + strandat 26.132 kb on + strandat 26.136 kb on + strandat 26.154 kb on - strandat 26.167 kb on + strandat 26.167 kb on + strandat 26.214 kb on + strand, within Atu6017at 26.246 kb on + strand, within Atu6017at 26.254 kb on - strand, within Atu6017at 26.254 kb on - strand, within Atu6017at 26.254 kb on - strand, within Atu6017at 26.272 kb on - strand, within Atu6017at 26.280 kb on + strand, within Atu6017at 26.282 kb on + strand, within Atu6017at 26.282 kb on + strand, within Atu6017at 26.309 kb on - strand, within Atu6017at 26.314 kb on - strand, within Atu6017at 26.335 kb on + strand, within Atu6017at 26.455 kb on - strand, within Atu6017at 26.493 kb on + strand, within Atu6017at 26.495 kb on + strand, within Atu6017at 26.501 kb on - strand, within Atu6017at 26.530 kb on + strand, within Atu6017at 26.538 kb on - strand, within Atu6017at 26.575 kb on - strand, within Atu6017at 26.582 kb on + strand, within Atu6017at 26.585 kb on - strand, within Atu6017at 26.593 kb on + strand, within Atu6017at 26.619 kb on - strand, within Atu6017at 26.654 kb on + strand, within Atu6017at 26.709 kb on - strand, within Atu6017at 26.709 kb on - strand, within Atu6017at 26.717 kb on + strand, within Atu6017at 26.771 kb on + strand, within Atu6017at 26.779 kb on - strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.843 kb on + strand, within Atu6017at 26.868 kb on - strand, within Atu6017at 26.875 kb on + strand, within Atu6017at 26.917 kb on + strand, within Atu6017at 26.942 kb on - strand, within Atu6017at 26.942 kb on - strand, within Atu6017at 27.012 kb on + strand, within Atu6017at 27.012 kb on + strand, within Atu6017at 27.018 kb on - strand, within Atu6017at 27.020 kb on - strand, within Atu6017at 27.020 kb on - strand, within Atu6017at 27.025 kb on - strand, within Atu6017at 27.029 kb on + strand, within Atu6017at 27.030 kb on - strand, within Atu6017at 27.037 kb on - strand, within Atu6017at 27.099 kb on - strandat 27.107 kb on - strandat 27.132 kb on + strandat 27.142 kb on + strandat 27.167 kb on + strandat 27.205 kb on - strandat 27.215 kb on + strandat 27.243 kb on - strandat 27.243 kb on - strandat 27.261 kb on + strandat 27.269 kb on - strandat 27.301 kb on + strandat 27.312 kb on + strandat 27.387 kb on - strand, within Atu6018at 27.400 kb on - strand, within Atu6018at 27.450 kb on + strand, within Atu6018at 27.450 kb on + strand, within Atu6018at 27.460 kb on + strand, within Atu6018at 27.460 kb on + strand, within Atu6018at 27.468 kb on - strand, within Atu6018at 27.511 kb on + strand, within Atu6018at 27.521 kb on + strand, within Atu6018at 27.544 kb on - strand, within Atu6018at 27.551 kb on + strand, within Atu6018at 27.598 kb on + strand, within Atu6018at 27.608 kb on + strand, within Atu6018at 27.698 kb on + strand, within Atu6018at 27.703 kb on + strand, within Atu6018at 27.735 kb on + strand, within Atu6018at 27.754 kb on - strand, within Atu6018at 27.782 kb on + strand, within Atu6018at 27.785 kb on - strand, within Atu6018at 27.788 kb on - strand, within Atu6018at 27.788 kb on - strand, within Atu6018at 27.819 kb on - strand, within Atu6018at 27.825 kb on + strand, within Atu6018at 27.853 kb on + strand, within Atu6018at 27.856 kb on - strand, within Atu6018at 27.904 kb on + strand, within Atu6018at 27.907 kb on - strand, within Atu6018at 27.926 kb on + strand, within Atu6018at 27.936 kb on + strand, within Atu6018at 27.936 kb on + strand, within Atu6018at 27.936 kb on + strand, within Atu6018at 27.956 kb on - strand, within Atu6018at 27.965 kb on - strand, within Atu6018at 27.998 kb on - strand, within Atu6018at 27.998 kb on - strand, within Atu6018at 28.050 kb on + strand, within Atu6018at 28.055 kb on + strand, within Atu6018at 28.055 kb on + strand, within Atu6018at 28.058 kb on - strand, within Atu6018at 28.063 kb on - strand, within Atu6018at 28.063 kb on - strand, within Atu6018at 28.064 kb on + strand, within Atu6018at 28.121 kb on + strand, within Atu6018at 28.136 kb on + strandat 28.145 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075
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25,156 - Atu6016 0.16 -2.4
25,187 + Atu6016 0.19 -1.0
25,195 - Atu6016 0.19 -1.7
25,195 - Atu6016 0.19 +0.2
25,195 - Atu6016 0.19 -1.1
25,205 - Atu6016 0.20 -0.9
25,232 - Atu6016 0.23 +0.3
25,232 - Atu6016 0.23 -0.6
25,272 + Atu6016 0.26 -2.1
25,301 + Atu6016 0.29 -2.3
25,309 - Atu6016 0.29 -2.9
25,328 - Atu6016 0.31 +0.2
25,330 + Atu6016 0.31 -1.7
25,330 + Atu6016 0.31 -0.7
25,330 + Atu6016 0.31 -1.0
25,330 + Atu6016 0.31 +0.6
25,374 - Atu6016 0.35 -0.7
25,374 - Atu6016 0.35 -0.1
25,383 - Atu6016 0.36 -0.1
25,388 + Atu6016 0.37 -0.3
25,401 - Atu6016 0.38 -0.3
25,411 + Atu6016 0.39 -1.3
25,425 + Atu6016 0.40 -1.4
25,425 + Atu6016 0.40 +0.3
25,464 - Atu6016 0.43 +0.1
25,466 + Atu6016 0.44 -1.4
25,485 + Atu6016 0.45 -0.6
25,493 + Atu6016 0.46 -0.7
25,495 + Atu6016 0.46 -0.7
25,503 - Atu6016 0.47 -0.9
25,525 + Atu6016 0.49 +0.1
25,533 - Atu6016 0.50 -1.1
25,560 + Atu6016 0.52 +0.3
25,560 + Atu6016 0.52 -0.2
25,565 + Atu6016 0.52 -0.9
25,587 + Atu6016 0.54 +0.5
25,608 + Atu6016 0.56 -1.8
25,619 - Atu6016 0.57 -0.8
25,621 + Atu6016 0.57 -0.7
25,624 - Atu6016 0.58 -0.9
25,655 - Atu6016 0.60 -1.7
25,720 + Atu6016 0.66 -0.5
25,762 + Atu6016 0.70 -0.7
25,820 + Atu6016 0.75 -1.1
25,828 - Atu6016 0.76 -1.2
25,903 + Atu6016 0.83 -0.4
25,958 + Atu6016 0.88 -0.4
25,966 - Atu6016 0.88 +0.3
26,004 + -1.0
26,019 + -0.7
26,019 + +0.3
26,019 + -0.7
26,019 + -0.4
26,019 + -0.2
26,019 + -0.4
26,019 + -1.0
26,019 + -0.8
26,027 - -0.8
26,043 - -0.7
26,052 - -0.9
26,055 + -0.8
26,076 + -0.7
26,132 + -0.1
26,136 + -0.7
26,154 - +0.7
26,167 + -1.3
26,167 + -1.2
26,214 + Atu6017 0.11 -1.9
26,246 + Atu6017 0.14 -0.5
26,254 - Atu6017 0.15 -0.3
26,254 - Atu6017 0.15 -0.3
26,254 - Atu6017 0.15 -0.4
26,272 - Atu6017 0.17 -0.5
26,280 + Atu6017 0.17 -0.9
26,282 + Atu6017 0.18 +0.5
26,282 + Atu6017 0.18 -0.9
26,309 - Atu6017 0.20 -1.2
26,314 - Atu6017 0.20 -0.5
26,335 + Atu6017 0.22 -0.1
26,455 - Atu6017 0.34 -0.2
26,493 + Atu6017 0.37 -0.1
26,495 + Atu6017 0.37 +0.3
26,501 - Atu6017 0.38 -0.5
26,530 + Atu6017 0.40 -0.3
26,538 - Atu6017 0.41 -1.7
26,575 - Atu6017 0.45 -1.2
26,582 + Atu6017 0.45 -0.6
26,585 - Atu6017 0.46 -0.9
26,593 + Atu6017 0.46 -1.1
26,619 - Atu6017 0.49 -1.0
26,654 + Atu6017 0.52 -1.3
26,709 - Atu6017 0.57 -1.2
26,709 - Atu6017 0.57 +0.0
26,717 + Atu6017 0.58 -2.4
26,771 + Atu6017 0.63 +0.6
26,779 - Atu6017 0.63 -0.7
26,786 + Atu6017 0.64 -0.1
26,786 + Atu6017 0.64 -0.1
26,786 + Atu6017 0.64 -0.8
26,786 + Atu6017 0.64 -0.6
26,794 - Atu6017 0.65 +0.1
26,794 - Atu6017 0.65 -1.2
26,794 - Atu6017 0.65 -0.9
26,794 - Atu6017 0.65 -0.5
26,843 + Atu6017 0.69 -0.8
26,868 - Atu6017 0.72 +0.3
26,875 + Atu6017 0.72 -0.9
26,917 + Atu6017 0.76 -0.3
26,942 - Atu6017 0.78 -1.2
26,942 - Atu6017 0.78 -0.4
27,012 + Atu6017 0.85 -0.2
27,012 + Atu6017 0.85 -1.5
27,018 - Atu6017 0.86 -0.8
27,020 - Atu6017 0.86 -2.6
27,020 - Atu6017 0.86 -0.9
27,025 - Atu6017 0.86 +0.4
27,029 + Atu6017 0.87 -0.7
27,030 - Atu6017 0.87 -1.2
27,037 - Atu6017 0.87 -0.7
27,099 - -1.0
27,107 - -0.8
27,132 + +0.0
27,142 + -1.1
27,167 + -0.3
27,205 - -0.9
27,215 + +1.0
27,243 - +0.4
27,243 - +0.4
27,261 + -0.3
27,269 - -0.2
27,301 + +0.6
27,312 + -1.1
27,387 - Atu6018 0.14 -0.2
27,400 - Atu6018 0.15 -1.9
27,450 + Atu6018 0.20 -0.2
27,450 + Atu6018 0.20 -0.6
27,460 + Atu6018 0.21 -0.1
27,460 + Atu6018 0.21 -1.0
27,468 - Atu6018 0.22 -0.5
27,511 + Atu6018 0.27 -0.4
27,521 + Atu6018 0.28 -0.7
27,544 - Atu6018 0.30 -0.5
27,551 + Atu6018 0.31 -1.2
27,598 + Atu6018 0.36 +1.6
27,608 + Atu6018 0.37 -0.7
27,698 + Atu6018 0.46 -0.8
27,703 + Atu6018 0.46 -0.3
27,735 + Atu6018 0.50 -1.0
27,754 - Atu6018 0.52 -0.8
27,782 + Atu6018 0.54 -1.4
27,785 - Atu6018 0.55 -1.4
27,788 - Atu6018 0.55 -1.8
27,788 - Atu6018 0.55 -0.5
27,819 - Atu6018 0.58 -0.3
27,825 + Atu6018 0.59 -0.4
27,853 + Atu6018 0.62 -0.1
27,856 - Atu6018 0.62 -0.4
27,904 + Atu6018 0.67 +0.0
27,907 - Atu6018 0.67 -2.1
27,926 + Atu6018 0.69 -1.2
27,936 + Atu6018 0.70 -0.8
27,936 + Atu6018 0.70 -0.1
27,936 + Atu6018 0.70 -0.9
27,956 - Atu6018 0.72 -1.0
27,965 - Atu6018 0.73 -0.2
27,998 - Atu6018 0.77 -0.5
27,998 - Atu6018 0.77 +0.6
28,050 + Atu6018 0.82 -1.8
28,055 + Atu6018 0.82 -1.5
28,055 + Atu6018 0.82 -1.5
28,058 - Atu6018 0.83 -0.0
28,063 - Atu6018 0.83 -1.4
28,063 - Atu6018 0.83 -0.3
28,064 + Atu6018 0.83 +0.2
28,121 + Atu6018 0.89 -0.8
28,136 + -0.3
28,145 - -0.5

Or see this region's nucleotide sequence