Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0139 and Atu0140 overlap by 1 nucleotides Atu0140 and Atu0141 are separated by 6 nucleotides Atu0141 and Atu0142 are separated by 76 nucleotides
Atu0139: Atu0139 - cytochrome o ubiquinol oxidase subunit IV, at 142,569 to 142,961
Atu0139
Atu0140: Atu0140 - cytochrome o ubiquinol oxidase subunit III, at 142,961 to 143,587
Atu0140
Atu0141: Atu0141 - cytochrome O ubiquinol oxidase subunit I, at 143,594 to 145,597
Atu0141
Atu0142: Atu0142 - cytochrome o ubiquinol oxidase subunit II, at 145,674 to 146,672
Atu0142
Position (kb) 143
144
145
146 Strain fitness (log2 ratio) -2
-1
0
1 at 143.083 kb on - strand, within Atu0140 at 143.093 kb on - strand, within Atu0140 at 143.227 kb on - strand, within Atu0140 at 143.728 kb on - strand at 143.743 kb on - strand at 143.822 kb on + strand, within Atu0141 at 143.971 kb on - strand, within Atu0141 at 144.754 kb on - strand, within Atu0141 at 145.458 kb on - strand at 145.492 kb on + strand at 145.808 kb on - strand, within Atu0142 at 146.054 kb on + strand, within Atu0142 at 146.179 kb on + strand, within Atu0142 at 146.446 kb on + strand, within Atu0142
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 remove 143,083 - Atu0140 0.19 -0.9 143,093 - Atu0140 0.21 +1.6 143,227 - Atu0140 0.42 -0.9 143,728 - -2.0 143,743 - -0.7 143,822 + Atu0141 0.11 -2.3 143,971 - Atu0141 0.19 +0.6 144,754 - Atu0141 0.58 -1.6 145,458 - +0.6 145,492 + -0.7 145,808 - Atu0142 0.13 -1.5 146,054 + Atu0142 0.38 -0.4 146,179 + Atu0142 0.51 -0.0 146,446 + Atu0142 0.77 -0.0
Or see this region's nucleotide sequence