Strain Fitness in Agrobacterium fabrum C58 around Atu6016

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6015 and Atu6016 are separated by 507 nucleotidesAtu6016 and Atu6017 overlap by 4 nucleotides Atu6015: Atu6015 - D-nopaline dehydrogenase, at 23,231 to 24,472 Atu6015 Atu6016: Atu6016 - ornithine cyclodeaminase, at 24,980 to 26,095 Atu6016 Atu6017: Atu6017 - NAD/NADP octopine/nopaline dehydrogenase, at 26,092 to 27,174 Atu6017 Position (kb) 24 25 26 27Strain fitness (log2 ratio) -2 -1 0 1 2at 24.001 kb on + strand, within Atu6015at 24.001 kb on + strand, within Atu6015at 24.057 kb on + strand, within Atu6015at 24.057 kb on + strand, within Atu6015at 24.076 kb on + strand, within Atu6015at 24.085 kb on - strand, within Atu6015at 24.096 kb on + strand, within Atu6015at 24.128 kb on - strand, within Atu6015at 24.128 kb on - strand, within Atu6015at 24.147 kb on + strand, within Atu6015at 24.160 kb on - strand, within Atu6015at 24.160 kb on - strand, within Atu6015at 24.170 kb on + strand, within Atu6015at 24.174 kb on + strand, within Atu6015at 24.178 kb on - strand, within Atu6015at 24.178 kb on - strand, within Atu6015at 24.179 kb on + strand, within Atu6015at 24.189 kb on + strand, within Atu6015at 24.192 kb on - strand, within Atu6015at 24.192 kb on - strand, within Atu6015at 24.214 kb on + strand, within Atu6015at 24.263 kb on + strand, within Atu6015at 24.264 kb on - strand, within Atu6015at 24.267 kb on - strand, within Atu6015at 24.269 kb on - strand, within Atu6015at 24.279 kb on - strand, within Atu6015at 24.296 kb on + strand, within Atu6015at 24.311 kb on + strand, within Atu6015at 24.326 kb on - strand, within Atu6015at 24.387 kb on + strandat 24.395 kb on - strandat 24.395 kb on - strandat 24.472 kb on + strandat 24.546 kb on - strandat 24.577 kb on + strandat 24.636 kb on - strandat 24.638 kb on - strandat 24.638 kb on - strandat 24.679 kb on - strandat 24.694 kb on + strandat 24.750 kb on + strandat 24.758 kb on - strandat 24.758 kb on - strandat 24.767 kb on + strandat 24.801 kb on + strandat 24.801 kb on - strandat 24.807 kb on + strandat 24.825 kb on - strandat 24.889 kb on - strandat 24.916 kb on - strandat 24.935 kb on - strandat 24.939 kb on + strandat 24.940 kb on - strandat 24.947 kb on - strandat 25.008 kb on + strandat 25.042 kb on + strandat 25.042 kb on + strandat 25.073 kb on + strandat 25.073 kb on + strandat 25.073 kb on + strandat 25.078 kb on + strandat 25.081 kb on - strandat 25.156 kb on - strand, within Atu6016at 25.187 kb on + strand, within Atu6016at 25.195 kb on - strand, within Atu6016at 25.195 kb on - strand, within Atu6016at 25.195 kb on - strand, within Atu6016at 25.205 kb on - strand, within Atu6016at 25.232 kb on - strand, within Atu6016at 25.232 kb on - strand, within Atu6016at 25.272 kb on + strand, within Atu6016at 25.301 kb on + strand, within Atu6016at 25.309 kb on - strand, within Atu6016at 25.328 kb on - strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.374 kb on - strand, within Atu6016at 25.374 kb on - strand, within Atu6016at 25.383 kb on - strand, within Atu6016at 25.388 kb on + strand, within Atu6016at 25.401 kb on - strand, within Atu6016at 25.411 kb on + strand, within Atu6016at 25.425 kb on + strand, within Atu6016at 25.425 kb on + strand, within Atu6016at 25.464 kb on - strand, within Atu6016at 25.466 kb on + strand, within Atu6016at 25.485 kb on + strand, within Atu6016at 25.493 kb on + strand, within Atu6016at 25.495 kb on + strand, within Atu6016at 25.503 kb on - strand, within Atu6016at 25.525 kb on + strand, within Atu6016at 25.533 kb on - strand, within Atu6016at 25.560 kb on + strand, within Atu6016at 25.560 kb on + strand, within Atu6016at 25.565 kb on + strand, within Atu6016at 25.587 kb on + strand, within Atu6016at 25.608 kb on + strand, within Atu6016at 25.619 kb on - strand, within Atu6016at 25.621 kb on + strand, within Atu6016at 25.624 kb on - strand, within Atu6016at 25.655 kb on - strand, within Atu6016at 25.720 kb on + strand, within Atu6016at 25.762 kb on + strand, within Atu6016at 25.820 kb on + strand, within Atu6016at 25.828 kb on - strand, within Atu6016at 25.903 kb on + strand, within Atu6016at 25.958 kb on + strand, within Atu6016at 25.966 kb on - strand, within Atu6016at 26.004 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.027 kb on - strandat 26.043 kb on - strandat 26.052 kb on - strandat 26.055 kb on + strandat 26.076 kb on + strandat 26.132 kb on + strandat 26.136 kb on + strandat 26.154 kb on - strandat 26.167 kb on + strandat 26.167 kb on + strandat 26.214 kb on + strand, within Atu6017at 26.246 kb on + strand, within Atu6017at 26.254 kb on - strand, within Atu6017at 26.254 kb on - strand, within Atu6017at 26.254 kb on - strand, within Atu6017at 26.272 kb on - strand, within Atu6017at 26.280 kb on + strand, within Atu6017at 26.282 kb on + strand, within Atu6017at 26.282 kb on + strand, within Atu6017at 26.309 kb on - strand, within Atu6017at 26.314 kb on - strand, within Atu6017at 26.335 kb on + strand, within Atu6017at 26.455 kb on - strand, within Atu6017at 26.493 kb on + strand, within Atu6017at 26.495 kb on + strand, within Atu6017at 26.501 kb on - strand, within Atu6017at 26.530 kb on + strand, within Atu6017at 26.538 kb on - strand, within Atu6017at 26.575 kb on - strand, within Atu6017at 26.582 kb on + strand, within Atu6017at 26.585 kb on - strand, within Atu6017at 26.593 kb on + strand, within Atu6017at 26.619 kb on - strand, within Atu6017at 26.654 kb on + strand, within Atu6017at 26.709 kb on - strand, within Atu6017at 26.709 kb on - strand, within Atu6017at 26.717 kb on + strand, within Atu6017at 26.771 kb on + strand, within Atu6017at 26.779 kb on - strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.843 kb on + strand, within Atu6017at 26.868 kb on - strand, within Atu6017at 26.875 kb on + strand, within Atu6017at 26.917 kb on + strand, within Atu6017at 26.942 kb on - strand, within Atu6017at 26.942 kb on - strand, within Atu6017at 27.012 kb on + strand, within Atu6017at 27.012 kb on + strand, within Atu6017at 27.018 kb on - strand, within Atu6017at 27.020 kb on - strand, within Atu6017at 27.020 kb on - strand, within Atu6017at 27.025 kb on - strand, within Atu6017at 27.029 kb on + strand, within Atu6017at 27.030 kb on - strand, within Atu6017at 27.037 kb on - strand, within Atu6017

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075
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24,001 + Atu6015 0.62 -0.3
24,001 + Atu6015 0.62 -0.4
24,057 + Atu6015 0.67 +0.1
24,057 + Atu6015 0.67 +0.3
24,076 + Atu6015 0.68 +0.5
24,085 - Atu6015 0.69 -0.2
24,096 + Atu6015 0.70 +1.5
24,128 - Atu6015 0.72 +0.3
24,128 - Atu6015 0.72 -0.2
24,147 + Atu6015 0.74 -0.1
24,160 - Atu6015 0.75 -1.0
24,160 - Atu6015 0.75 -0.2
24,170 + Atu6015 0.76 -0.2
24,174 + Atu6015 0.76 -0.4
24,178 - Atu6015 0.76 -0.1
24,178 - Atu6015 0.76 +0.0
24,179 + Atu6015 0.76 +0.0
24,189 + Atu6015 0.77 -0.0
24,192 - Atu6015 0.77 +0.1
24,192 - Atu6015 0.77 +1.8
24,214 + Atu6015 0.79 +0.0
24,263 + Atu6015 0.83 +0.2
24,264 - Atu6015 0.83 -0.1
24,267 - Atu6015 0.83 +1.1
24,269 - Atu6015 0.84 -0.1
24,279 - Atu6015 0.84 -0.2
24,296 + Atu6015 0.86 -0.6
24,311 + Atu6015 0.87 -0.0
24,326 - Atu6015 0.88 +0.5
24,387 + -0.0
24,395 - +0.5
24,395 - -0.0
24,472 + +1.1
24,546 - +1.1
24,577 + -1.7
24,636 - -0.5
24,638 - +0.8
24,638 - +0.4
24,679 - +0.3
24,694 + -0.2
24,750 + +0.1
24,758 - +0.4
24,758 - +1.9
24,767 + -0.1
24,801 + -0.4
24,801 - -0.4
24,807 + +0.5
24,825 - +0.5
24,889 - -0.9
24,916 - -1.1
24,935 - -0.2
24,939 + -0.3
24,940 - -0.2
24,947 - -0.6
25,008 + -0.8
25,042 + -1.1
25,042 + -0.8
25,073 + -0.4
25,073 + -0.7
25,073 + -0.4
25,078 + -0.6
25,081 - -0.2
25,156 - Atu6016 0.16 -1.2
25,187 + Atu6016 0.19 -1.0
25,195 - Atu6016 0.19 -1.9
25,195 - Atu6016 0.19 -2.2
25,195 - Atu6016 0.19 -0.5
25,205 - Atu6016 0.20 -0.4
25,232 - Atu6016 0.23 -0.9
25,232 - Atu6016 0.23 -0.9
25,272 + Atu6016 0.26 -1.4
25,301 + Atu6016 0.29 +0.2
25,309 - Atu6016 0.29 -1.7
25,328 - Atu6016 0.31 -0.4
25,330 + Atu6016 0.31 -0.5
25,330 + Atu6016 0.31 -0.6
25,330 + Atu6016 0.31 -0.8
25,330 + Atu6016 0.31 +2.6
25,374 - Atu6016 0.35 -0.1
25,374 - Atu6016 0.35 -0.5
25,383 - Atu6016 0.36 -1.4
25,388 + Atu6016 0.37 +0.1
25,401 - Atu6016 0.38 -1.5
25,411 + Atu6016 0.39 -0.9
25,425 + Atu6016 0.40 -0.5
25,425 + Atu6016 0.40 +1.4
25,464 - Atu6016 0.43 -0.8
25,466 + Atu6016 0.44 -1.1
25,485 + Atu6016 0.45 -0.9
25,493 + Atu6016 0.46 -0.5
25,495 + Atu6016 0.46 +1.1
25,503 - Atu6016 0.47 -0.8
25,525 + Atu6016 0.49 -1.0
25,533 - Atu6016 0.50 -1.4
25,560 + Atu6016 0.52 -1.7
25,560 + Atu6016 0.52 -0.4
25,565 + Atu6016 0.52 -0.9
25,587 + Atu6016 0.54 -0.4
25,608 + Atu6016 0.56 -1.2
25,619 - Atu6016 0.57 -1.3
25,621 + Atu6016 0.57 -0.9
25,624 - Atu6016 0.58 -1.1
25,655 - Atu6016 0.60 -0.6
25,720 + Atu6016 0.66 -1.0
25,762 + Atu6016 0.70 -0.6
25,820 + Atu6016 0.75 -0.4
25,828 - Atu6016 0.76 -1.5
25,903 + Atu6016 0.83 -1.3
25,958 + Atu6016 0.88 -0.5
25,966 - Atu6016 0.88 -0.4
26,004 + -1.0
26,019 + -0.5
26,019 + +0.6
26,019 + -2.1
26,019 + -0.6
26,019 + -0.6
26,019 + -0.4
26,019 + -0.3
26,019 + -1.2
26,027 - -0.9
26,043 - -1.5
26,052 - -0.8
26,055 + +0.2
26,076 + -0.3
26,132 + -0.5
26,136 + -1.1
26,154 - +1.4
26,167 + -1.1
26,167 + -1.0
26,214 + Atu6017 0.11 -0.9
26,246 + Atu6017 0.14 +0.6
26,254 - Atu6017 0.15 -0.8
26,254 - Atu6017 0.15 -0.4
26,254 - Atu6017 0.15 -0.7
26,272 - Atu6017 0.17 +0.0
26,280 + Atu6017 0.17 -0.6
26,282 + Atu6017 0.18 -0.2
26,282 + Atu6017 0.18 +0.6
26,309 - Atu6017 0.20 -1.3
26,314 - Atu6017 0.20 -0.8
26,335 + Atu6017 0.22 -1.2
26,455 - Atu6017 0.34 -0.5
26,493 + Atu6017 0.37 +0.1
26,495 + Atu6017 0.37 -0.1
26,501 - Atu6017 0.38 -1.4
26,530 + Atu6017 0.40 -0.6
26,538 - Atu6017 0.41 -1.5
26,575 - Atu6017 0.45 -1.2
26,582 + Atu6017 0.45 -0.5
26,585 - Atu6017 0.46 -0.7
26,593 + Atu6017 0.46 -2.0
26,619 - Atu6017 0.49 -1.3
26,654 + Atu6017 0.52 -0.6
26,709 - Atu6017 0.57 -0.6
26,709 - Atu6017 0.57 +0.1
26,717 + Atu6017 0.58 -0.5
26,771 + Atu6017 0.63 +0.1
26,779 - Atu6017 0.63 -0.8
26,786 + Atu6017 0.64 -0.8
26,786 + Atu6017 0.64 -1.0
26,786 + Atu6017 0.64 -0.4
26,786 + Atu6017 0.64 -1.1
26,794 - Atu6017 0.65 -0.3
26,794 - Atu6017 0.65 -0.8
26,794 - Atu6017 0.65 -1.1
26,794 - Atu6017 0.65 -0.7
26,843 + Atu6017 0.69 -1.1
26,868 - Atu6017 0.72 -1.9
26,875 + Atu6017 0.72 -0.9
26,917 + Atu6017 0.76 -0.6
26,942 - Atu6017 0.78 -1.0
26,942 - Atu6017 0.78 -0.0
27,012 + Atu6017 0.85 -1.5
27,012 + Atu6017 0.85 -0.9
27,018 - Atu6017 0.86 -0.5
27,020 - Atu6017 0.86 -2.4
27,020 - Atu6017 0.86 -1.6
27,025 - Atu6017 0.86 -0.9
27,029 + Atu6017 0.87 -1.5
27,030 - Atu6017 0.87 -1.2
27,037 - Atu6017 0.87 -0.2

Or see this region's nucleotide sequence