Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0498 and Atu0499 are separated by 264 nucleotides Atu0499 and Atu0500 overlap by 71 nucleotides Atu0500 and Atu0501 are separated by 165 nucleotides
Atu0498: Atu0498 - hypothetical protein, at 484,683 to 485,609
Atu0498
Atu0499: Atu0499 - hypothetical protein, at 485,874 to 489,620
Atu0499
Atu0500: Atu0500 - hypothetical protein, at 489,550 to 489,831
Atu0500
Atu0501: Atu0501 - acyl-CoA dehydrogenase, at 489,997 to 491,793
Atu0501
Position (kb) 485
486
487
488
489
490 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 484.920 kb on + strand, within Atu0498 at 484.964 kb on + strand, within Atu0498 at 485.033 kb on - strand, within Atu0498 at 485.042 kb on + strand, within Atu0498 at 485.050 kb on - strand, within Atu0498 at 485.161 kb on - strand, within Atu0498 at 485.249 kb on - strand, within Atu0498 at 485.331 kb on - strand, within Atu0498 at 485.362 kb on - strand, within Atu0498 at 485.367 kb on - strand, within Atu0498 at 485.386 kb on - strand, within Atu0498 at 485.440 kb on - strand, within Atu0498 at 485.502 kb on + strand, within Atu0498 at 485.720 kb on - strand at 485.720 kb on - strand at 485.720 kb on - strand at 485.736 kb on + strand at 485.744 kb on - strand at 485.755 kb on - strand at 485.807 kb on + strand at 485.974 kb on - strand at 486.033 kb on + strand at 486.150 kb on - strand at 486.157 kb on - strand at 486.163 kb on + strand at 486.222 kb on + strand at 486.385 kb on + strand, within Atu0499 at 486.413 kb on + strand, within Atu0499 at 486.421 kb on - strand, within Atu0499 at 486.421 kb on - strand, within Atu0499 at 486.454 kb on + strand, within Atu0499 at 486.464 kb on + strand, within Atu0499 at 486.484 kb on - strand, within Atu0499 at 486.583 kb on + strand, within Atu0499 at 486.670 kb on - strand, within Atu0499 at 486.717 kb on + strand, within Atu0499 at 486.738 kb on - strand, within Atu0499 at 486.959 kb on - strand, within Atu0499 at 487.029 kb on + strand, within Atu0499 at 487.031 kb on - strand, within Atu0499 at 487.075 kb on - strand, within Atu0499 at 487.414 kb on + strand, within Atu0499 at 487.529 kb on - strand, within Atu0499 at 487.701 kb on - strand, within Atu0499 at 487.776 kb on - strand, within Atu0499 at 487.818 kb on + strand, within Atu0499 at 487.844 kb on - strand, within Atu0499 at 487.870 kb on - strand, within Atu0499 at 487.888 kb on - strand, within Atu0499 at 487.908 kb on + strand, within Atu0499 at 488.400 kb on + strand, within Atu0499 at 488.437 kb on + strand, within Atu0499 at 488.445 kb on - strand, within Atu0499 at 488.927 kb on - strand, within Atu0499 at 489.200 kb on - strand, within Atu0499 at 489.228 kb on + strand, within Atu0499 at 489.451 kb on - strand at 489.606 kb on - strand at 489.986 kb on - strand at 490.026 kb on - strand at 490.090 kb on - strand at 490.107 kb on + strand at 490.168 kb on - strand at 490.188 kb on - strand, within Atu0501 at 490.190 kb on - strand, within Atu0501 at 490.238 kb on - strand, within Atu0501 at 490.274 kb on + strand, within Atu0501 at 490.382 kb on + strand, within Atu0501 at 490.473 kb on + strand, within Atu0501 at 490.481 kb on + strand, within Atu0501 at 490.489 kb on - strand, within Atu0501 at 490.532 kb on - strand, within Atu0501 at 490.538 kb on - strand, within Atu0501
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 remove 484,920 + Atu0498 0.26 -0.1 484,964 + Atu0498 0.30 +0.2 485,033 - Atu0498 0.38 -0.0 485,042 + Atu0498 0.39 -0.2 485,050 - Atu0498 0.40 +0.1 485,161 - Atu0498 0.52 -1.2 485,249 - Atu0498 0.61 -0.1 485,331 - Atu0498 0.70 -0.3 485,362 - Atu0498 0.73 -0.3 485,367 - Atu0498 0.74 +0.5 485,386 - Atu0498 0.76 -0.8 485,440 - Atu0498 0.82 -0.2 485,502 + Atu0498 0.88 +0.2 485,720 - +0.0 485,720 - -0.2 485,720 - +0.5 485,736 + -2.4 485,744 - +0.6 485,755 - -1.1 485,807 + +0.5 485,974 - +0.1 486,033 + +0.1 486,150 - -0.2 486,157 - -0.0 486,163 + -0.1 486,222 + -1.0 486,385 + Atu0499 0.14 -3.2 486,413 + Atu0499 0.14 -1.2 486,421 - Atu0499 0.15 +0.0 486,421 - Atu0499 0.15 -1.3 486,454 + Atu0499 0.15 -1.4 486,464 + Atu0499 0.16 -1.6 486,484 - Atu0499 0.16 -1.6 486,583 + Atu0499 0.19 -1.1 486,670 - Atu0499 0.21 -1.4 486,717 + Atu0499 0.22 -0.9 486,738 - Atu0499 0.23 -0.4 486,959 - Atu0499 0.29 -1.5 487,029 + Atu0499 0.31 -1.2 487,031 - Atu0499 0.31 -3.4 487,075 - Atu0499 0.32 -2.6 487,414 + Atu0499 0.41 -3.2 487,529 - Atu0499 0.44 -3.5 487,701 - Atu0499 0.49 +0.8 487,776 - Atu0499 0.51 -0.9 487,818 + Atu0499 0.52 -2.2 487,844 - Atu0499 0.53 -0.6 487,870 - Atu0499 0.53 -1.2 487,888 - Atu0499 0.54 -1.4 487,908 + Atu0499 0.54 -1.2 488,400 + Atu0499 0.67 -2.8 488,437 + Atu0499 0.68 -2.2 488,445 - Atu0499 0.69 -0.6 488,927 - Atu0499 0.81 -1.6 489,200 - Atu0499 0.89 -1.7 489,228 + Atu0499 0.90 -0.9 489,451 - -1.4 489,606 - -1.9 489,986 - -2.2 490,026 - +0.3 490,090 - -0.3 490,107 + -0.1 490,168 - +0.7 490,188 - Atu0501 0.11 -0.0 490,190 - Atu0501 0.11 +0.6 490,238 - Atu0501 0.13 +0.2 490,274 + Atu0501 0.15 +0.3 490,382 + Atu0501 0.21 +0.1 490,473 + Atu0501 0.26 +0.6 490,481 + Atu0501 0.27 -0.1 490,489 - Atu0501 0.27 -0.4 490,532 - Atu0501 0.30 +1.3 490,538 - Atu0501 0.30 +0.0
Or see this region's nucleotide sequence