Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6141 and Atu6142 overlap by 4 nucleotides Atu6142 and Atu6143 overlap by 8 nucleotides Atu6143 and Atu6144 are separated by 15 nucleotides Atu6144 and Atu6145 overlap by 8 nucleotides
Atu6141: Atu6141 - ABC transporter, nucleotide binding/ATPase protein (agrocinopine), at 160,859 to 161,878
Atu6141
Atu6142: Atu6142 - ABC transporter, membrane spanning protein (agrocinopine), at 161,875 to 162,801
Atu6142
Atu6143: Atu6143 - ABC transporter, membrane spanning protein (agrocinopine), at 162,794 to 163,654
Atu6143
Atu6144: Atu6144 - agrocinopine phosphodiesterase, at 163,670 to 164,470
Atu6144
Atu6145: Atu6145 - arabinose phosphate phosphatase, at 164,463 to 165,281
Atu6145
Position (kb) 162
163
164 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 161.808 kb on - strand at 161.808 kb on - strand at 161.810 kb on + strand at 161.847 kb on + strand at 162.029 kb on - strand, within Atu6142 at 162.029 kb on - strand, within Atu6142 at 162.031 kb on + strand, within Atu6142 at 162.032 kb on + strand, within Atu6142 at 162.037 kb on + strand, within Atu6142 at 162.037 kb on + strand, within Atu6142 at 162.039 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.050 kb on - strand, within Atu6142 at 162.050 kb on - strand, within Atu6142 at 162.053 kb on + strand, within Atu6142 at 162.061 kb on - strand, within Atu6142 at 162.063 kb on + strand, within Atu6142 at 162.071 kb on - strand, within Atu6142 at 162.122 kb on + strand, within Atu6142 at 162.138 kb on - strand, within Atu6142 at 162.156 kb on + strand, within Atu6142 at 162.270 kb on + strand, within Atu6142 at 162.287 kb on + strand, within Atu6142 at 162.288 kb on - strand, within Atu6142 at 162.457 kb on - strand, within Atu6142 at 162.459 kb on + strand, within Atu6142 at 162.459 kb on + strand, within Atu6142 at 162.467 kb on - strand, within Atu6142 at 162.477 kb on + strand, within Atu6142 at 162.477 kb on + strand, within Atu6142 at 162.480 kb on - strand, within Atu6142 at 162.613 kb on + strand, within Atu6142 at 162.617 kb on - strand, within Atu6142 at 162.630 kb on + strand, within Atu6142 at 162.640 kb on + strand, within Atu6142 at 162.711 kb on - strand at 162.726 kb on - strand at 162.771 kb on - strand at 162.851 kb on + strand at 162.861 kb on + strand at 162.861 kb on + strand at 162.869 kb on - strand at 162.921 kb on + strand, within Atu6143 at 162.921 kb on + strand, within Atu6143 at 162.921 kb on + strand, within Atu6143 at 162.922 kb on - strand, within Atu6143 at 162.946 kb on + strand, within Atu6143 at 162.947 kb on - strand, within Atu6143 at 162.947 kb on - strand, within Atu6143 at 162.949 kb on - strand, within Atu6143 at 162.953 kb on + strand, within Atu6143 at 162.953 kb on + strand, within Atu6143 at 162.961 kb on - strand, within Atu6143 at 163.002 kb on - strand, within Atu6143 at 163.007 kb on - strand, within Atu6143 at 163.009 kb on + strand, within Atu6143 at 163.041 kb on - strand, within Atu6143 at 163.054 kb on - strand, within Atu6143 at 163.054 kb on - strand, within Atu6143 at 163.079 kb on + strand, within Atu6143 at 163.164 kb on + strand, within Atu6143 at 163.197 kb on - strand, within Atu6143 at 163.219 kb on - strand, within Atu6143 at 163.316 kb on + strand, within Atu6143 at 163.324 kb on + strand, within Atu6143 at 163.333 kb on - strand, within Atu6143 at 163.353 kb on - strand, within Atu6143 at 163.388 kb on + strand, within Atu6143 at 163.396 kb on - strand, within Atu6143 at 163.396 kb on - strand, within Atu6143 at 163.458 kb on - strand, within Atu6143 at 163.469 kb on - strand, within Atu6143 at 163.503 kb on + strand, within Atu6143 at 163.503 kb on + strand, within Atu6143 at 163.508 kb on + strand, within Atu6143 at 163.562 kb on + strand, within Atu6143 at 163.691 kb on - strand at 163.856 kb on + strand, within Atu6144 at 163.857 kb on - strand, within Atu6144 at 163.864 kb on - strand, within Atu6144 at 163.876 kb on + strand, within Atu6144 at 163.905 kb on + strand, within Atu6144 at 163.924 kb on - strand, within Atu6144 at 163.942 kb on - strand, within Atu6144 at 163.952 kb on - strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.983 kb on - strand, within Atu6144 at 163.983 kb on - strand, within Atu6144 at 163.983 kb on - strand, within Atu6144 at 163.998 kb on + strand, within Atu6144 at 164.087 kb on + strand, within Atu6144 at 164.090 kb on - strand, within Atu6144 at 164.095 kb on - strand, within Atu6144 at 164.097 kb on + strand, within Atu6144 at 164.097 kb on + strand, within Atu6144 at 164.097 kb on + strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.180 kb on + strand, within Atu6144 at 164.271 kb on + strand, within Atu6144 at 164.296 kb on + strand, within Atu6144 at 164.353 kb on + strand, within Atu6144 at 164.361 kb on - strand, within Atu6144 at 164.445 kb on + strand at 164.447 kb on + strand at 164.469 kb on + strand at 164.477 kb on - strand at 164.477 kb on - strand at 164.550 kb on - strand, within Atu6145 at 164.550 kb on - strand, within Atu6145 at 164.569 kb on + strand, within Atu6145 at 164.576 kb on - strand, within Atu6145 at 164.596 kb on - strand, within Atu6145 at 164.596 kb on - strand, within Atu6145
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 161,808 - -0.7 161,808 - -0.9 161,810 + +0.5 161,847 + -0.1 162,029 - Atu6142 0.17 +0.4 162,029 - Atu6142 0.17 -0.9 162,031 + Atu6142 0.17 -1.2 162,032 + Atu6142 0.17 -0.1 162,037 + Atu6142 0.17 +0.3 162,037 + Atu6142 0.17 -1.0 162,039 - Atu6142 0.18 -0.5 162,045 - Atu6142 0.18 -0.6 162,045 - Atu6142 0.18 -2.0 162,045 - Atu6142 0.18 -0.8 162,045 - Atu6142 0.18 -0.7 162,045 - Atu6142 0.18 -0.1 162,045 - Atu6142 0.18 -0.9 162,050 - Atu6142 0.19 -0.9 162,050 - Atu6142 0.19 -0.3 162,053 + Atu6142 0.19 -0.9 162,061 - Atu6142 0.20 +0.1 162,063 + Atu6142 0.20 -1.1 162,071 - Atu6142 0.21 -0.9 162,122 + Atu6142 0.27 -0.4 162,138 - Atu6142 0.28 -1.0 162,156 + Atu6142 0.30 -0.8 162,270 + Atu6142 0.43 -1.2 162,287 + Atu6142 0.44 -1.2 162,288 - Atu6142 0.45 -1.3 162,457 - Atu6142 0.63 -0.6 162,459 + Atu6142 0.63 -0.6 162,459 + Atu6142 0.63 -0.5 162,467 - Atu6142 0.64 -0.5 162,477 + Atu6142 0.65 -1.8 162,477 + Atu6142 0.65 -0.7 162,480 - Atu6142 0.65 -1.0 162,613 + Atu6142 0.80 -0.2 162,617 - Atu6142 0.80 -0.9 162,630 + Atu6142 0.81 -0.5 162,640 + Atu6142 0.83 -0.9 162,711 - -1.1 162,726 - -1.1 162,771 - -0.9 162,851 + -0.6 162,861 + -2.4 162,861 + -1.3 162,869 - -1.0 162,921 + Atu6143 0.15 -1.5 162,921 + Atu6143 0.15 -0.8 162,921 + Atu6143 0.15 +0.2 162,922 - Atu6143 0.15 -0.6 162,946 + Atu6143 0.18 -0.9 162,947 - Atu6143 0.18 -1.2 162,947 - Atu6143 0.18 -2.0 162,949 - Atu6143 0.18 +0.1 162,953 + Atu6143 0.18 -1.3 162,953 + Atu6143 0.18 -0.8 162,961 - Atu6143 0.19 -0.8 163,002 - Atu6143 0.24 -1.1 163,007 - Atu6143 0.25 -1.8 163,009 + Atu6143 0.25 -0.8 163,041 - Atu6143 0.29 -0.8 163,054 - Atu6143 0.30 -0.9 163,054 - Atu6143 0.30 -0.9 163,079 + Atu6143 0.33 -0.6 163,164 + Atu6143 0.43 -1.9 163,197 - Atu6143 0.47 -0.1 163,219 - Atu6143 0.49 -1.6 163,316 + Atu6143 0.61 -0.5 163,324 + Atu6143 0.62 -0.9 163,333 - Atu6143 0.63 -1.1 163,353 - Atu6143 0.65 +0.1 163,388 + Atu6143 0.69 -1.9 163,396 - Atu6143 0.70 -1.6 163,396 - Atu6143 0.70 +0.7 163,458 - Atu6143 0.77 -0.6 163,469 - Atu6143 0.78 +0.3 163,503 + Atu6143 0.82 -1.0 163,503 + Atu6143 0.82 -0.2 163,508 + Atu6143 0.83 -0.9 163,562 + Atu6143 0.89 -1.3 163,691 - -4.0 163,856 + Atu6144 0.23 -3.9 163,857 - Atu6144 0.23 -1.6 163,864 - Atu6144 0.24 -3.4 163,876 + Atu6144 0.26 -2.2 163,905 + Atu6144 0.29 -2.9 163,924 - Atu6144 0.32 -3.2 163,942 - Atu6144 0.34 -3.1 163,952 - Atu6144 0.35 -1.1 163,975 + Atu6144 0.38 -3.0 163,975 + Atu6144 0.38 -2.5 163,975 + Atu6144 0.38 -3.0 163,975 + Atu6144 0.38 -1.4 163,975 + Atu6144 0.38 -4.4 163,983 - Atu6144 0.39 -2.9 163,983 - Atu6144 0.39 -2.9 163,983 - Atu6144 0.39 -2.2 163,998 + Atu6144 0.41 -3.3 164,087 + Atu6144 0.52 -2.5 164,090 - Atu6144 0.52 -2.5 164,095 - Atu6144 0.53 -0.1 164,097 + Atu6144 0.53 -2.3 164,097 + Atu6144 0.53 -3.8 164,097 + Atu6144 0.53 -3.4 164,105 - Atu6144 0.54 -2.4 164,105 - Atu6144 0.54 -2.7 164,105 - Atu6144 0.54 -2.7 164,105 - Atu6144 0.54 -1.3 164,180 + Atu6144 0.64 -1.9 164,271 + Atu6144 0.75 -4.4 164,296 + Atu6144 0.78 -2.5 164,353 + Atu6144 0.85 -1.6 164,361 - Atu6144 0.86 -2.9 164,445 + -0.6 164,447 + -2.0 164,469 + -0.9 164,477 - -0.6 164,477 - -0.9 164,550 - Atu6145 0.11 -1.2 164,550 - Atu6145 0.11 -1.2 164,569 + Atu6145 0.13 -1.4 164,576 - Atu6145 0.14 -1.0 164,596 - Atu6145 0.16 -1.8 164,596 - Atu6145 0.16 -0.6
Or see this region's nucleotide sequence