Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0359 and Atu0360 are separated by 206 nucleotides Atu0360 and Atu0361 are separated by 133 nucleotides Atu0361 and Atu0362 are separated by 186 nucleotides
Atu0359: Atu0359 - hemolysin, at 352,675 to 353,817
Atu0359
Atu0360: Atu0360 - apolipoprotein N-acyltransferase, at 354,024 to 355,613
Atu0360
Atu0361: Atu0361 - transcriptional regulator, at 355,747 to 356,166
Atu0361
Atu0362: Atu0362 - S-adenosylmethionine synthetase, at 356,353 to 357,615
Atu0362
Position (kb) 354
355
356 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 353.025 kb on - strand, within Atu0359 at 353.025 kb on - strand, within Atu0359 at 353.084 kb on - strand, within Atu0359 at 353.189 kb on - strand, within Atu0359 at 353.242 kb on - strand, within Atu0359 at 353.291 kb on + strand, within Atu0359 at 353.291 kb on + strand, within Atu0359 at 353.298 kb on - strand, within Atu0359 at 353.313 kb on + strand, within Atu0359 at 353.313 kb on + strand, within Atu0359 at 353.321 kb on - strand, within Atu0359 at 353.372 kb on + strand, within Atu0359 at 353.445 kb on + strand, within Atu0359 at 353.601 kb on + strand, within Atu0359 at 353.627 kb on - strand, within Atu0359 at 353.636 kb on - strand, within Atu0359 at 353.722 kb on + strand at 353.756 kb on + strand at 353.764 kb on - strand at 353.798 kb on - strand at 353.803 kb on - strand at 353.810 kb on - strand at 353.879 kb on - strand at 353.923 kb on - strand at 353.925 kb on + strand at 354.029 kb on - strand at 354.043 kb on + strand at 354.043 kb on + strand at 354.043 kb on + strand at 354.043 kb on + strand at 354.043 kb on + strand at 354.043 kb on + strand at 354.051 kb on - strand at 354.056 kb on - strand at 354.207 kb on + strand, within Atu0360 at 354.273 kb on + strand, within Atu0360 at 354.371 kb on + strand, within Atu0360 at 354.371 kb on + strand, within Atu0360 at 354.404 kb on + strand, within Atu0360 at 354.417 kb on - strand, within Atu0360 at 354.495 kb on + strand, within Atu0360 at 354.560 kb on - strand, within Atu0360 at 354.617 kb on - strand, within Atu0360 at 354.665 kb on - strand, within Atu0360 at 354.708 kb on + strand, within Atu0360 at 354.764 kb on - strand, within Atu0360 at 354.951 kb on + strand, within Atu0360 at 354.952 kb on + strand, within Atu0360 at 354.957 kb on + strand, within Atu0360 at 354.968 kb on - strand, within Atu0360 at 354.987 kb on - strand, within Atu0360 at 355.143 kb on + strand, within Atu0360 at 355.196 kb on - strand, within Atu0360 at 355.207 kb on - strand, within Atu0360 at 355.229 kb on - strand, within Atu0360 at 355.229 kb on - strand, within Atu0360 at 355.338 kb on - strand, within Atu0360 at 355.358 kb on + strand, within Atu0360 at 355.450 kb on + strand, within Atu0360 at 355.639 kb on + strand at 355.715 kb on + strand at 355.723 kb on - strand at 355.767 kb on + strand at 355.775 kb on - strand at 355.775 kb on - strand at 355.853 kb on - strand, within Atu0361 at 356.000 kb on + strand, within Atu0361 at 356.000 kb on + strand, within Atu0361 at 356.026 kb on - strand, within Atu0361 at 356.124 kb on - strand, within Atu0361 at 356.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 353,025 - Atu0359 0.31 +0.4 353,025 - Atu0359 0.31 -0.5 353,084 - Atu0359 0.36 +0.1 353,189 - Atu0359 0.45 +0.2 353,242 - Atu0359 0.50 +1.2 353,291 + Atu0359 0.54 -0.5 353,291 + Atu0359 0.54 +0.7 353,298 - Atu0359 0.55 +0.3 353,313 + Atu0359 0.56 -1.2 353,313 + Atu0359 0.56 -0.2 353,321 - Atu0359 0.57 -0.4 353,372 + Atu0359 0.61 +1.6 353,445 + Atu0359 0.67 +0.1 353,601 + Atu0359 0.81 -0.7 353,627 - Atu0359 0.83 +0.2 353,636 - Atu0359 0.84 +0.2 353,722 + +0.2 353,756 + -0.4 353,764 - -0.2 353,798 - +0.1 353,803 - -0.4 353,810 - -0.1 353,879 - +0.1 353,923 - +0.5 353,925 + -1.1 354,029 - +0.2 354,043 + -1.7 354,043 + -0.1 354,043 + -0.3 354,043 + -0.2 354,043 + -0.2 354,043 + +0.1 354,051 - -0.4 354,056 - -0.7 354,207 + Atu0360 0.12 -0.3 354,273 + Atu0360 0.16 -0.4 354,371 + Atu0360 0.22 -0.2 354,371 + Atu0360 0.22 -0.5 354,404 + Atu0360 0.24 +0.4 354,417 - Atu0360 0.25 -0.8 354,495 + Atu0360 0.30 +0.9 354,560 - Atu0360 0.34 -0.5 354,617 - Atu0360 0.37 -0.5 354,665 - Atu0360 0.40 -0.6 354,708 + Atu0360 0.43 +0.4 354,764 - Atu0360 0.47 -1.3 354,951 + Atu0360 0.58 -1.3 354,952 + Atu0360 0.58 -2.0 354,957 + Atu0360 0.59 +2.5 354,968 - Atu0360 0.59 -0.2 354,987 - Atu0360 0.61 +0.8 355,143 + Atu0360 0.70 -0.9 355,196 - Atu0360 0.74 -0.4 355,207 - Atu0360 0.74 -0.4 355,229 - Atu0360 0.76 +1.9 355,229 - Atu0360 0.76 -1.7 355,338 - Atu0360 0.83 -1.0 355,358 + Atu0360 0.84 -0.4 355,450 + Atu0360 0.90 -0.3 355,639 + -0.7 355,715 + -1.8 355,723 - -2.4 355,767 + +0.5 355,775 - +0.9 355,775 - -1.3 355,853 - Atu0361 0.25 +1.5 356,000 + Atu0361 0.60 -2.6 356,000 + Atu0361 0.60 -3.4 356,026 - Atu0361 0.66 +1.5 356,124 - Atu0361 0.90 -0.5 356,206 - +0.1
Or see this region's nucleotide sequence