Strain Fitness in Agrobacterium fabrum C58 around Atu2655

Experiment: Benthi_leaf_C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benthi_leaf_C58C1OD2.0
2,636,607	-				+1.1
2,636,607	-				+2.2
2,637,329	+				-0.2
2,637,396	+				-0.4
2,637,396	+				-0.2
2,637,396	+				+0.3
2,637,396	+				-0.3
2,637,403	-				-0.3
2,637,469	-				-0.4
2,637,553	-				-0.6
2,637,577	+		Atu2655	0.10	-2.2
2,637,580	-		Atu2655	0.10	-1.2
2,637,592	-		Atu2655	0.11	-0.1
2,637,629	+		Atu2655	0.14	-1.5
2,637,726	-		Atu2655	0.21	-0.5
2,637,858	+		Atu2655	0.30	+0.1
2,637,866	-		Atu2655	0.30	-0.5
2,637,927	-		Atu2655	0.34	-0.1
2,637,927	-		Atu2655	0.34	-1.0
2,637,927	-		Atu2655	0.34	+0.8
2,637,937	-		Atu2655	0.35	+0.9
2,637,938	-		Atu2655	0.35	+1.1
2,638,063	+		Atu2655	0.44	-0.2
2,638,445	+		Atu2655	0.70	-0.9
2,638,453	-		Atu2655	0.71	-0.6
2,638,453	-		Atu2655	0.71	-0.4
2,638,453	-		Atu2655	0.71	-0.3
2,638,453	-		Atu2655	0.71	-0.9
2,638,489	-		Atu2655	0.73	-1.0
2,638,490	-		Atu2655	0.73	-0.1
2,638,592	+		Atu2655	0.80	+0.2
2,638,639	-		Atu2655	0.84	-1.0
2,638,661	+		Atu2655	0.85	-0.2
2,638,706	+		Atu2655	0.88	-0.6
2,638,747	+				-0.3
2,638,838	+				+0.7
2,638,841	-				+1.5
2,638,957	-				-0.5
2,639,011	+				-0.5
2,639,112	+		Atu2656	0.14	-0.5
2,639,132	+		Atu2656	0.16	-0.2
2,639,132	+		Atu2656	0.16	-0.7
2,639,190	+		Atu2656	0.19	-0.2
2,639,265	-		Atu2656	0.24	-0.8
2,639,291	-		Atu2656	0.25	+1.5
2,639,347	-		Atu2656	0.29	+1.1
2,639,439	+		Atu2656	0.35	-0.1
2,639,447	-		Atu2656	0.35	-0.6
2,639,447	-		Atu2656	0.35	-0.2
2,639,447	-		Atu2656	0.35	-0.4
2,639,457	-		Atu2656	0.36	-0.5
2,639,495	+		Atu2656	0.38	+0.0
2,639,531	+		Atu2656	0.40	-0.6
2,639,567	-		Atu2656	0.43	+0.6
2,639,690	+		Atu2656	0.50	-0.6
2,639,733	+		Atu2656	0.53	-0.2
2,639,786	-		Atu2656	0.56	-0.4
2,639,831	-		Atu2656	0.59	-1.9