Strain Fitness in Agrobacterium fabrum C58 around Atu2373

Experiment: Benthi_leaf_C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benthi_leaf_C58C1OD2.0
2,345,671	+				-0.1
2,345,671	+				-0.1
2,345,765	+				+0.2
2,345,812	-		Atu2372	0.13	-0.2
2,345,812	-		Atu2372	0.13	-0.3
2,345,850	-		Atu2372	0.17	+0.3
2,346,054	-		Atu2372	0.38	-1.0
2,346,214	-		Atu2372	0.55	-0.7
2,346,261	+		Atu2372	0.60	-0.2
2,346,330	-		Atu2372	0.68	-0.6
2,346,352	+		Atu2372	0.70	-0.0
2,346,360	-		Atu2372	0.71	+0.5
2,346,373	+		Atu2372	0.72	-0.4
2,346,470	+		Atu2372	0.82	+0.9
2,346,505	-		Atu2372	0.86	+0.2
2,346,567	+				-1.1
2,346,590	+				-0.2
2,346,678	-				+0.5
2,346,739	-		Atu2373	0.10	-1.0
2,346,739	-		Atu2373	0.10	+0.2
2,346,788	-		Atu2373	0.15	-2.2
2,346,840	+		Atu2373	0.21	-1.2
2,346,863	-		Atu2373	0.23	-0.4
2,346,889	-		Atu2373	0.26	-0.4
2,346,892	+		Atu2373	0.26	-0.1
2,346,902	+		Atu2373	0.27	-1.1
2,346,910	-		Atu2373	0.28	-0.6
2,346,913	-		Atu2373	0.28	-1.0
2,346,931	-		Atu2373	0.30	+0.3
2,346,931	-		Atu2373	0.30	-0.4
2,346,958	+		Atu2373	0.33	+0.3
2,346,974	-		Atu2373	0.35	-0.7
2,347,100	+		Atu2373	0.48	-0.1
2,347,157	-		Atu2373	0.54	-0.5
2,347,196	+		Atu2373	0.58	-0.6
2,347,326	+		Atu2373	0.72	-0.1
2,347,334	-		Atu2373	0.73	-0.8
2,347,334	-		Atu2373	0.73	-0.2
2,347,393	+		Atu2373	0.79	-1.5
2,347,403	+		Atu2373	0.80	-0.5
2,347,403	+		Atu2373	0.80	-0.3
2,347,521	-				-0.7
2,347,545	+				-0.7
2,347,545	+				+0.5
2,347,545	+				-1.3
2,347,553	-				+0.3
2,347,864	-		Atu2374	0.73	-0.6
2,347,912	+		Atu2374	0.87	+0.3
2,347,912	+		Atu2374	0.87	-0.2
2,347,912	+		Atu2374	0.87	-0.3
2,347,912	+		Atu2374	0.87	-0.6
2,347,920	-				-1.8
2,347,920	-				+0.2
2,347,920	-				+0.6
2,347,920	-				-0.2
2,347,920	-				-0.3
2,348,025	+				+0.6
2,348,025	+				-0.9
2,348,045	+				-0.5
2,348,053	-				-0.9
2,348,157	-		Atu2375	0.15	-0.3
2,348,216	+		Atu2375	0.22	-0.1
2,348,416	+		Atu2375	0.47	+0.4
2,348,424	-		Atu2375	0.48	+0.3
2,348,424	-		Atu2375	0.48	-0.3
2,348,458	+		Atu2375	0.52	+0.1
2,348,543	-		Atu2375	0.63	+0.3