Experiment: Benthi_leaf_C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0514 and Atu0515 overlap by 1 nucleotides Atu0515 and Atu0516 overlap by 4 nucleotides Atu0516 and Atu0517 are separated by 76 nucleotides
Atu0514: Atu0514 - methyl-accepting chemotaxis protein, at 504,030 to 505,736
Atu0514
Atu0515: Atu0515 - hypothetical protein, at 505,736 to 506,035
Atu0515
Atu0516: Atu0516 - chemotaxis receiver protein, at 506,032 to 506,397
Atu0516
Atu0517: Atu0517 - Chemotaxis protein histidine kinase, at 506,474 to 508,687
Atu0517
Position (kb) 506
507 Strain fitness (log2 ratio) -1
0
1 at 505.144 kb on - strand, within Atu0514 at 505.215 kb on + strand, within Atu0514 at 505.439 kb on - strand, within Atu0514 at 505.526 kb on + strand, within Atu0514 at 505.559 kb on + strand, within Atu0514 at 505.720 kb on + strand at 505.721 kb on + strand at 505.799 kb on + strand, within Atu0515 at 505.813 kb on - strand, within Atu0515 at 505.863 kb on + strand, within Atu0515 at 505.863 kb on + strand, within Atu0515 at 505.977 kb on - strand, within Atu0515 at 506.014 kb on + strand at 506.144 kb on + strand, within Atu0516 at 506.171 kb on - strand, within Atu0516 at 506.176 kb on - strand, within Atu0516 at 506.176 kb on - strand, within Atu0516 at 506.314 kb on + strand, within Atu0516 at 506.314 kb on + strand, within Atu0516 at 506.347 kb on + strand, within Atu0516 at 506.382 kb on + strand at 506.390 kb on - strand at 506.454 kb on + strand at 506.467 kb on - strand at 506.621 kb on + strand at 506.654 kb on - strand at 506.713 kb on - strand, within Atu0517 at 506.785 kb on + strand, within Atu0517 at 506.793 kb on - strand, within Atu0517 at 506.793 kb on - strand, within Atu0517 at 506.866 kb on + strand, within Atu0517 at 506.900 kb on + strand, within Atu0517 at 506.950 kb on + strand, within Atu0517 at 506.959 kb on + strand, within Atu0517 at 507.002 kb on - strand, within Atu0517 at 507.044 kb on + strand, within Atu0517 at 507.213 kb on + strand, within Atu0517 at 507.248 kb on - strand, within Atu0517 at 507.267 kb on + strand, within Atu0517 at 507.304 kb on - strand, within Atu0517
Per-strain Table
Position Strand Gene LocusTag Fraction Benthi_leaf_C58C1OD2.0 remove 505,144 - Atu0514 0.65 +1.1 505,215 + Atu0514 0.69 +0.4 505,439 - Atu0514 0.83 +0.1 505,526 + Atu0514 0.88 -0.1 505,559 + Atu0514 0.90 +0.1 505,720 + +0.0 505,721 + -0.7 505,799 + Atu0515 0.21 -0.1 505,813 - Atu0515 0.26 +0.1 505,863 + Atu0515 0.42 +0.0 505,863 + Atu0515 0.42 -0.4 505,977 - Atu0515 0.80 -0.3 506,014 + -0.0 506,144 + Atu0516 0.31 +0.7 506,171 - Atu0516 0.38 +0.3 506,176 - Atu0516 0.39 -0.3 506,176 - Atu0516 0.39 -0.3 506,314 + Atu0516 0.77 +0.1 506,314 + Atu0516 0.77 +0.1 506,347 + Atu0516 0.86 -0.4 506,382 + -0.3 506,390 - +0.7 506,454 + -0.6 506,467 - -0.9 506,621 + +0.3 506,654 - -0.4 506,713 - Atu0517 0.11 -0.4 506,785 + Atu0517 0.14 -0.3 506,793 - Atu0517 0.14 +1.5 506,793 - Atu0517 0.14 +0.3 506,866 + Atu0517 0.18 -0.2 506,900 + Atu0517 0.19 +0.8 506,950 + Atu0517 0.21 -1.1 506,959 + Atu0517 0.22 +0.1 507,002 - Atu0517 0.24 +0.0 507,044 + Atu0517 0.26 +0.1 507,213 + Atu0517 0.33 +0.0 507,248 - Atu0517 0.35 -0.3 507,267 + Atu0517 0.36 -0.1 507,304 - Atu0517 0.37 -0.6
Or see this region's nucleotide sequence