Experiment: Benthi_leaf_C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0445 and Atu0446 are separated by 487 nucleotides Atu0446 and Atu8082 are separated by 158 nucleotides Atu8082 and Atu0447 are separated by 56 nucleotides
Atu0445: Atu0445 - hypothetical protein, at 439,628 to 440,125
Atu0445
Atu0446: Atu0446 - hypothetical protein, at 440,613 to 441,758
Atu0446
Atu8082: Atu8082 - hypothetical protein, at 441,917 to 442,468
Atu8082
Atu0447: Atu0447 - hypothetical protein, at 442,525 to 443,106
Atu0447
Position (kb) 440
441
442 Strain fitness (log2 ratio) -2
-1
0
1
2 at 439.615 kb on - strand at 439.654 kb on + strand at 439.662 kb on - strand at 439.790 kb on + strand, within Atu0445 at 439.796 kb on - strand, within Atu0445 at 439.838 kb on - strand, within Atu0445 at 439.887 kb on + strand, within Atu0445 at 439.889 kb on + strand, within Atu0445 at 440.057 kb on + strand, within Atu0445 at 440.057 kb on + strand, within Atu0445 at 440.065 kb on - strand, within Atu0445 at 440.093 kb on - strand at 440.236 kb on + strand at 440.340 kb on + strand at 440.340 kb on + strand at 440.340 kb on + strand at 440.348 kb on - strand at 440.348 kb on - strand at 440.457 kb on - strand at 440.460 kb on - strand at 440.490 kb on - strand at 440.746 kb on + strand, within Atu0446 at 441.092 kb on + strand, within Atu0446 at 441.127 kb on - strand, within Atu0446 at 441.256 kb on + strand, within Atu0446 at 441.290 kb on - strand, within Atu0446 at 441.347 kb on - strand, within Atu0446 at 441.366 kb on + strand, within Atu0446 at 441.387 kb on + strand, within Atu0446 at 441.414 kb on + strand, within Atu0446 at 441.559 kb on - strand, within Atu0446 at 441.632 kb on + strand, within Atu0446 at 441.828 kb on + strand at 441.836 kb on - strand at 441.836 kb on - strand at 442.022 kb on + strand, within Atu8082 at 442.032 kb on + strand, within Atu8082 at 442.262 kb on - strand, within Atu8082 at 442.729 kb on - strand, within Atu0447
Per-strain Table
Position Strand Gene LocusTag Fraction Benthi_leaf_C58C1OD2.0 remove 439,615 - -0.0 439,654 + -0.2 439,662 - +0.2 439,790 + Atu0445 0.33 +0.6 439,796 - Atu0445 0.34 +2.1 439,838 - Atu0445 0.42 +0.1 439,887 + Atu0445 0.52 -0.4 439,889 + Atu0445 0.52 +0.6 440,057 + Atu0445 0.86 +0.0 440,057 + Atu0445 0.86 -0.0 440,065 - Atu0445 0.88 -0.7 440,093 - +1.9 440,236 + +0.0 440,340 + -0.7 440,340 + -0.2 440,340 + +0.1 440,348 - +0.0 440,348 - +0.0 440,457 - +0.1 440,460 - -0.1 440,490 - -0.7 440,746 + Atu0446 0.12 +0.3 441,092 + Atu0446 0.42 -0.2 441,127 - Atu0446 0.45 +0.5 441,256 + Atu0446 0.56 -0.7 441,290 - Atu0446 0.59 -0.8 441,347 - Atu0446 0.64 -0.6 441,366 + Atu0446 0.66 -0.4 441,387 + Atu0446 0.68 -1.4 441,414 + Atu0446 0.70 +0.0 441,559 - Atu0446 0.83 -0.7 441,632 + Atu0446 0.89 -1.1 441,828 + -0.1 441,836 - -0.3 441,836 - -0.6 442,022 + Atu8082 0.19 -0.5 442,032 + Atu8082 0.21 +0.4 442,262 - Atu8082 0.62 -2.2 442,729 - Atu0447 0.35 +0.5
Or see this region's nucleotide sequence