Strain Fitness in Agrobacterium fabrum C58 around Atu4405

Experiment: Benthi_leaf_C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benthi_leaf_C58C1OD2.0
1,540,399	-		Atu4404	0.35	-0.2
1,540,405	+		Atu4404	0.35	-0.4
1,540,439	+		Atu4404	0.38	+0.1
1,540,488	+		Atu4404	0.42	+0.1
1,540,488	+		Atu4404	0.42	+0.1
1,540,488	+		Atu4404	0.42	+0.2
1,540,496	-		Atu4404	0.43	-0.9
1,540,596	-		Atu4404	0.51	+2.1
1,540,762	+		Atu4404	0.65	+0.1
1,540,762	+		Atu4404	0.65	+0.1
1,540,768	-		Atu4404	0.66	+0.0
1,540,868	+		Atu4404	0.74	+0.3
1,540,868	+		Atu4404	0.74	+0.7
1,541,014	+		Atu4404	0.87	+0.3
1,541,016	+		Atu4404	0.87	+0.1
1,541,016	+		Atu4404	0.87	+0.8
1,541,016	+		Atu4404	0.87	+0.6
1,541,016	+		Atu4404	0.87	-0.3
1,541,016	+		Atu4404	0.87	-0.4
1,541,016	+		Atu4404	0.87	+0.4
1,541,024	-		Atu4404	0.87	-0.0
1,541,024	-		Atu4404	0.87	+0.5
1,541,024	-		Atu4404	0.87	+0.4
1,541,071	+				+0.1
1,541,074	+				-0.4
1,541,076	+				-0.2
1,541,076	+				+0.4
1,541,076	+				+0.1
1,541,084	-				-0.1
1,541,084	-				-0.5
1,541,109	+				+0.2
1,541,119	-				-0.2
1,541,158	-				+0.0
1,541,267	+				-0.4
1,541,288	-				-0.1
1,541,356	+				-0.3
1,541,455	-		Atu4405	0.38	+0.1
1,541,456	+		Atu4405	0.39	-0.2
1,541,464	-		Atu4405	0.43	+0.9
1,541,801	+		Atu4406	0.45	+0.2
1,541,873	+		Atu4406	0.59	-0.6
1,542,173	-		Atu4407	0.36	-0.2
1,542,262	-		Atu4407	0.67	+0.4
1,542,352	+				-0.0
1,542,360	-				+0.1
1,542,516	+				+1.2