Experiment: Benthi_leaf_C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3147 and Atu3148 are separated by 35 nucleotides Atu3148 and Atu3149 are separated by 9 nucleotides Atu3149 and Atu3150 overlap by 4 nucleotides
Atu3147: Atu3147 - oxidoreductase, at 154,354 to 156,357
Atu3147
Atu3148: Atu3148 - sugar ABC transporter ATPase, at 156,393 to 157,478
Atu3148
Atu3149: Atu3149 - sugar ABC transporter permease, at 157,488 to 158,324
Atu3149
Atu3150: Atu3150 - sugar ABC transporter permease, at 158,321 to 159,181
Atu3150
Position (kb) 156
157
158 Strain fitness (log2 ratio) -1
0
1
2 at 155.471 kb on + strand, within Atu3147 at 155.594 kb on - strand, within Atu3147 at 155.611 kb on + strand, within Atu3147 at 155.618 kb on + strand, within Atu3147 at 155.687 kb on + strand, within Atu3147 at 155.705 kb on + strand, within Atu3147 at 155.785 kb on + strand, within Atu3147 at 155.785 kb on + strand, within Atu3147 at 155.794 kb on + strand, within Atu3147 at 155.880 kb on - strand, within Atu3147 at 155.933 kb on - strand, within Atu3147 at 156.042 kb on + strand, within Atu3147 at 156.179 kb on + strand at 156.187 kb on - strand at 156.222 kb on + strand at 156.255 kb on + strand at 156.255 kb on + strand at 156.263 kb on - strand at 156.263 kb on - strand at 156.279 kb on + strand at 156.279 kb on + strand at 156.287 kb on - strand at 156.301 kb on - strand at 156.451 kb on + strand at 156.536 kb on - strand, within Atu3148 at 156.536 kb on - strand, within Atu3148 at 156.546 kb on - strand, within Atu3148 at 156.625 kb on - strand, within Atu3148 at 156.665 kb on + strand, within Atu3148 at 156.678 kb on + strand, within Atu3148 at 156.895 kb on + strand, within Atu3148 at 156.901 kb on - strand, within Atu3148 at 156.901 kb on - strand, within Atu3148 at 156.925 kb on + strand, within Atu3148 at 157.100 kb on - strand, within Atu3148 at 157.113 kb on - strand, within Atu3148 at 157.156 kb on + strand, within Atu3148 at 157.164 kb on - strand, within Atu3148 at 157.164 kb on - strand, within Atu3148 at 157.395 kb on + strand at 157.485 kb on + strand at 157.512 kb on - strand at 157.574 kb on - strand, within Atu3149 at 157.574 kb on - strand, within Atu3149 at 157.574 kb on - strand, within Atu3149 at 157.579 kb on - strand, within Atu3149 at 157.579 kb on - strand, within Atu3149 at 157.603 kb on + strand, within Atu3149 at 157.632 kb on + strand, within Atu3149 at 157.640 kb on - strand, within Atu3149 at 157.789 kb on + strand, within Atu3149 at 157.839 kb on - strand, within Atu3149 at 157.872 kb on - strand, within Atu3149 at 157.965 kb on - strand, within Atu3149 at 157.975 kb on - strand, within Atu3149 at 158.071 kb on + strand, within Atu3149 at 158.220 kb on - strand, within Atu3149 at 158.342 kb on - strand at 158.372 kb on - strand at 158.455 kb on - strand, within Atu3150
Per-strain Table
Position Strand Gene LocusTag Fraction Benthi_leaf_C58C1OD2.0 remove 155,471 + Atu3147 0.56 -0.5 155,594 - Atu3147 0.62 +0.1 155,611 + Atu3147 0.63 +0.7 155,618 + Atu3147 0.63 +0.5 155,687 + Atu3147 0.67 -0.2 155,705 + Atu3147 0.67 +0.4 155,785 + Atu3147 0.71 +0.0 155,785 + Atu3147 0.71 +0.7 155,794 + Atu3147 0.72 -0.1 155,880 - Atu3147 0.76 -0.1 155,933 - Atu3147 0.79 -0.8 156,042 + Atu3147 0.84 +0.2 156,179 + -0.2 156,187 - +0.1 156,222 + -0.3 156,255 + -0.0 156,255 + -0.1 156,263 - -0.5 156,263 - +0.1 156,279 + -0.1 156,279 + +0.3 156,287 - +0.4 156,301 - +0.0 156,451 + +0.5 156,536 - Atu3148 0.13 +0.7 156,536 - Atu3148 0.13 +0.0 156,546 - Atu3148 0.14 +1.5 156,625 - Atu3148 0.21 -0.3 156,665 + Atu3148 0.25 -0.9 156,678 + Atu3148 0.26 +0.2 156,895 + Atu3148 0.46 +1.9 156,901 - Atu3148 0.47 +0.4 156,901 - Atu3148 0.47 -0.2 156,925 + Atu3148 0.49 -0.3 157,100 - Atu3148 0.65 +0.1 157,113 - Atu3148 0.66 +0.6 157,156 + Atu3148 0.70 -0.3 157,164 - Atu3148 0.71 +0.2 157,164 - Atu3148 0.71 +0.5 157,395 + -1.4 157,485 + -1.1 157,512 - +0.5 157,574 - Atu3149 0.10 +0.8 157,574 - Atu3149 0.10 +0.0 157,574 - Atu3149 0.10 +0.3 157,579 - Atu3149 0.11 -0.5 157,579 - Atu3149 0.11 +0.0 157,603 + Atu3149 0.14 -0.7 157,632 + Atu3149 0.17 -0.3 157,640 - Atu3149 0.18 +0.3 157,789 + Atu3149 0.36 +0.5 157,839 - Atu3149 0.42 +0.3 157,872 - Atu3149 0.46 -0.0 157,965 - Atu3149 0.57 +0.0 157,975 - Atu3149 0.58 +0.8 158,071 + Atu3149 0.70 -0.1 158,220 - Atu3149 0.87 +0.1 158,342 - +0.0 158,372 - +0.2 158,455 - Atu3150 0.16 -1.1
Or see this region's nucleotide sequence