Experiment: Benthi_leaf_C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3127 and Atu3128 are separated by 153 nucleotides Atu3128 and Atu3129 are separated by 8 nucleotides
Atu3127: Atu3127 - acetyltransferase, at 133,736 to 134,833
Atu3127
Atu3128: Atu3128 - di-trans,poly-cis-decaprenylcistransferase, at 134,987 to 136,084
Atu3128
Atu3129: Atu3129 - polygalacturonase-like protein, at 136,093 to 137,646
Atu3129
Position (kb) 134
135
136
137 Strain fitness (log2 ratio) -1
0
1 at 134.004 kb on + strand, within Atu3127 at 134.026 kb on + strand, within Atu3127 at 134.052 kb on - strand, within Atu3127 at 134.052 kb on - strand, within Atu3127 at 134.092 kb on + strand, within Atu3127 at 134.103 kb on + strand, within Atu3127 at 134.116 kb on - strand, within Atu3127 at 134.139 kb on + strand, within Atu3127 at 134.237 kb on + strand, within Atu3127 at 134.422 kb on + strand, within Atu3127 at 134.442 kb on + strand, within Atu3127 at 134.544 kb on - strand, within Atu3127 at 134.604 kb on + strand, within Atu3127 at 134.732 kb on - strand at 134.778 kb on + strand at 134.785 kb on + strand at 134.786 kb on - strand at 134.811 kb on - strand at 134.821 kb on - strand at 134.906 kb on - strand at 135.006 kb on - strand at 135.061 kb on - strand at 135.169 kb on - strand, within Atu3128 at 135.216 kb on + strand, within Atu3128 at 135.217 kb on - strand, within Atu3128 at 135.253 kb on + strand, within Atu3128 at 135.275 kb on - strand, within Atu3128 at 135.389 kb on + strand, within Atu3128 at 135.427 kb on + strand, within Atu3128 at 135.434 kb on + strand, within Atu3128 at 135.541 kb on + strand, within Atu3128 at 135.637 kb on + strand, within Atu3128 at 135.645 kb on - strand, within Atu3128 at 135.702 kb on + strand, within Atu3128 at 135.707 kb on + strand, within Atu3128 at 135.710 kb on - strand, within Atu3128 at 135.715 kb on - strand, within Atu3128 at 135.883 kb on + strand, within Atu3128 at 135.891 kb on - strand, within Atu3128 at 135.988 kb on - strand at 135.990 kb on - strand at 136.009 kb on + strand at 136.127 kb on + strand at 136.132 kb on - strand at 136.167 kb on + strand at 136.243 kb on - strand at 136.320 kb on - strand, within Atu3129 at 136.350 kb on + strand, within Atu3129 at 136.416 kb on - strand, within Atu3129 at 136.467 kb on + strand, within Atu3129 at 136.671 kb on + strand, within Atu3129 at 136.679 kb on - strand, within Atu3129 at 136.755 kb on - strand, within Atu3129 at 136.825 kb on - strand, within Atu3129 at 136.869 kb on - strand, within Atu3129 at 136.970 kb on - strand, within Atu3129 at 137.045 kb on - strand, within Atu3129
Per-strain Table
Position Strand Gene LocusTag Fraction Benthi_leaf_C58C1OD2.0 remove 134,004 + Atu3127 0.24 +0.7 134,026 + Atu3127 0.26 -0.4 134,052 - Atu3127 0.29 +0.1 134,052 - Atu3127 0.29 -0.0 134,092 + Atu3127 0.32 -0.1 134,103 + Atu3127 0.33 +0.1 134,116 - Atu3127 0.35 +0.5 134,139 + Atu3127 0.37 -0.2 134,237 + Atu3127 0.46 +0.7 134,422 + Atu3127 0.62 +0.5 134,442 + Atu3127 0.64 +0.4 134,544 - Atu3127 0.74 -0.3 134,604 + Atu3127 0.79 -1.3 134,732 - +0.2 134,778 + -0.2 134,785 + -1.0 134,786 - -0.3 134,811 - +0.7 134,821 - -0.1 134,906 - +0.1 135,006 - -0.0 135,061 - -0.3 135,169 - Atu3128 0.17 +0.2 135,216 + Atu3128 0.21 +0.7 135,217 - Atu3128 0.21 -0.0 135,253 + Atu3128 0.24 +0.2 135,275 - Atu3128 0.26 +0.4 135,389 + Atu3128 0.37 -0.1 135,427 + Atu3128 0.40 +0.1 135,434 + Atu3128 0.41 -0.0 135,541 + Atu3128 0.50 +0.9 135,637 + Atu3128 0.59 -0.2 135,645 - Atu3128 0.60 +0.4 135,702 + Atu3128 0.65 +0.2 135,707 + Atu3128 0.66 -0.0 135,710 - Atu3128 0.66 -0.4 135,715 - Atu3128 0.66 -0.1 135,883 + Atu3128 0.82 -0.0 135,891 - Atu3128 0.82 +0.5 135,988 - -0.1 135,990 - +0.0 136,009 + -0.4 136,127 + +0.2 136,132 - +0.1 136,167 + -0.1 136,243 - -0.1 136,320 - Atu3129 0.15 -0.7 136,350 + Atu3129 0.17 +0.2 136,416 - Atu3129 0.21 +0.3 136,467 + Atu3129 0.24 +0.1 136,671 + Atu3129 0.37 +0.5 136,679 - Atu3129 0.38 +0.3 136,755 - Atu3129 0.43 +0.1 136,825 - Atu3129 0.47 -0.0 136,869 - Atu3129 0.50 -0.8 136,970 - Atu3129 0.56 +0.5 137,045 - Atu3129 0.61 -0.1
Or see this region's nucleotide sequence