Experiment: Benthi_leaf_C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0747 and Atu0748 are separated by 2 nucleotides Atu0748 and Atu0749 are separated by 25 nucleotides Atu0749 and Atu0750 are separated by 5 nucleotides Atu0750 and Atu0751 overlap by 4 nucleotides
Atu0747: Atu0747 - exodeoxyribonuclease small subunit, at 745,930 to 746,184
Atu0747
Atu0748: Atu0748 - deacetylase, at 746,187 to 747,122
Atu0748
Atu0749: Atu0749 - biotin synthesis BioY protein, at 747,148 to 747,711
Atu0749
Atu0750: Atu0750 - ABC transporter, membrane spanning protein, at 747,717 to 748,349
Atu0750
Atu0751: Atu0751 - ABC transporter, nucleotide binding/ATPase protein (cobalt), at 748,346 to 749,026
Atu0751
Position (kb) 747
748 Strain fitness (log2 ratio) -2
-1
0
1 at 746.185 kb on + strand at 746.352 kb on - strand, within Atu0748 at 746.503 kb on + strand, within Atu0748 at 746.582 kb on + strand, within Atu0748 at 746.622 kb on - strand, within Atu0748 at 746.654 kb on + strand, within Atu0748 at 746.662 kb on - strand, within Atu0748 at 746.678 kb on - strand, within Atu0748 at 746.709 kb on - strand, within Atu0748 at 746.719 kb on + strand, within Atu0748 at 746.721 kb on - strand, within Atu0748 at 746.745 kb on + strand, within Atu0748 at 746.869 kb on + strand, within Atu0748 at 746.973 kb on + strand, within Atu0748 at 746.981 kb on - strand, within Atu0748 at 747.074 kb on - strand at 747.091 kb on - strand at 747.254 kb on + strand, within Atu0749 at 747.288 kb on + strand, within Atu0749 at 747.296 kb on - strand, within Atu0749 at 747.418 kb on + strand, within Atu0749 at 747.509 kb on - strand, within Atu0749 at 747.588 kb on - strand, within Atu0749 at 747.603 kb on + strand, within Atu0749 at 747.659 kb on - strand at 747.747 kb on + strand at 747.747 kb on + strand at 747.839 kb on - strand, within Atu0750 at 747.889 kb on - strand, within Atu0750 at 747.889 kb on - strand, within Atu0750 at 747.891 kb on - strand, within Atu0750 at 747.928 kb on - strand, within Atu0750 at 747.952 kb on + strand, within Atu0750 at 747.960 kb on - strand, within Atu0750 at 747.970 kb on - strand, within Atu0750 at 747.992 kb on + strand, within Atu0750 at 748.000 kb on - strand, within Atu0750 at 748.000 kb on - strand, within Atu0750 at 748.029 kb on + strand, within Atu0750 at 748.050 kb on - strand, within Atu0750 at 748.084 kb on + strand, within Atu0750 at 748.113 kb on + strand, within Atu0750 at 748.121 kb on - strand, within Atu0750 at 748.142 kb on + strand, within Atu0750 at 748.142 kb on + strand, within Atu0750 at 748.199 kb on + strand, within Atu0750 at 748.199 kb on + strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.209 kb on + strand, within Atu0750 at 748.209 kb on + strand, within Atu0750 at 748.217 kb on - strand, within Atu0750 at 748.217 kb on - strand, within Atu0750 at 748.259 kb on + strand, within Atu0750 at 748.267 kb on - strand, within Atu0750 at 748.296 kb on - strand at 748.360 kb on + strand at 748.360 kb on + strand at 748.360 kb on + strand at 748.368 kb on - strand at 748.374 kb on + strand at 748.436 kb on + strand, within Atu0751 at 748.505 kb on - strand, within Atu0751 at 748.627 kb on + strand, within Atu0751
Per-strain Table
Position Strand Gene LocusTag Fraction Benthi_leaf_C58C1OD2.0 remove 746,185 + -0.7 746,352 - Atu0748 0.18 -0.6 746,503 + Atu0748 0.34 -0.0 746,582 + Atu0748 0.42 -0.5 746,622 - Atu0748 0.46 -0.7 746,654 + Atu0748 0.50 -2.4 746,662 - Atu0748 0.51 -0.5 746,678 - Atu0748 0.52 -0.5 746,709 - Atu0748 0.56 +0.6 746,719 + Atu0748 0.57 +0.0 746,721 - Atu0748 0.57 +0.7 746,745 + Atu0748 0.60 +0.5 746,869 + Atu0748 0.73 +0.4 746,973 + Atu0748 0.84 -0.1 746,981 - Atu0748 0.85 +0.3 747,074 - +0.0 747,091 - -0.1 747,254 + Atu0749 0.19 -1.5 747,288 + Atu0749 0.25 -1.0 747,296 - Atu0749 0.26 +0.0 747,418 + Atu0749 0.48 -0.3 747,509 - Atu0749 0.64 -1.0 747,588 - Atu0749 0.78 +0.2 747,603 + Atu0749 0.81 +1.1 747,659 - -0.1 747,747 + +0.7 747,747 + -0.3 747,839 - Atu0750 0.19 -0.6 747,889 - Atu0750 0.27 -0.2 747,889 - Atu0750 0.27 -0.9 747,891 - Atu0750 0.27 -0.6 747,928 - Atu0750 0.33 -0.3 747,952 + Atu0750 0.37 +0.2 747,960 - Atu0750 0.38 +0.1 747,970 - Atu0750 0.40 +1.0 747,992 + Atu0750 0.43 -0.2 748,000 - Atu0750 0.45 -0.0 748,000 - Atu0750 0.45 -0.7 748,029 + Atu0750 0.49 -0.1 748,050 - Atu0750 0.53 -0.0 748,084 + Atu0750 0.58 +0.1 748,113 + Atu0750 0.63 -0.2 748,121 - Atu0750 0.64 -0.1 748,142 + Atu0750 0.67 -0.4 748,142 + Atu0750 0.67 -0.2 748,199 + Atu0750 0.76 +0.1 748,199 + Atu0750 0.76 -0.1 748,207 - Atu0750 0.77 -0.7 748,207 - Atu0750 0.77 -1.9 748,207 - Atu0750 0.77 +0.3 748,207 - Atu0750 0.77 -0.4 748,209 + Atu0750 0.78 +0.8 748,209 + Atu0750 0.78 +0.2 748,217 - Atu0750 0.79 -0.4 748,217 - Atu0750 0.79 -0.1 748,259 + Atu0750 0.86 +0.5 748,267 - Atu0750 0.87 +0.0 748,296 - -0.1 748,360 + +0.1 748,360 + -0.1 748,360 + -0.3 748,368 - -0.2 748,374 + -0.5 748,436 + Atu0751 0.13 -0.7 748,505 - Atu0751 0.23 -0.3 748,627 + Atu0751 0.41 -0.1
Or see this region's nucleotide sequence