Experiment: Benthi_leaf_C58C1OD0.075
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3135 and Atu3136 are separated by 0 nucleotides Atu3136 and Atu3137 are separated by 70 nucleotides Atu3137 and Atu3138 are separated by 143 nucleotides
Atu3135: Atu3135 - ABC transporter permease, at 143,113 to 144,393
Atu3135
Atu3136: Atu3136 - ABC transporter permease, at 144,394 to 144,915
Atu3136
Atu3137: Atu3137 - C4-dicarboxylate-binding protein, at 144,986 to 145,963
Atu3137
Atu3138: Atu3138 - hypothetical protein, at 146,107 to 146,985
Atu3138
Position (kb) 144
145
146 Strain fitness (log2 ratio) -2
-1
0
1
2 at 143.990 kb on + strand, within Atu3135 at 143.998 kb on - strand, within Atu3135 at 144.039 kb on - strand, within Atu3135 at 144.104 kb on + strand, within Atu3135 at 144.112 kb on - strand, within Atu3135 at 144.114 kb on + strand, within Atu3135 at 144.114 kb on + strand, within Atu3135 at 144.197 kb on - strand, within Atu3135 at 144.300 kb on - strand at 144.361 kb on + strand at 144.369 kb on - strand at 144.430 kb on + strand at 144.537 kb on + strand, within Atu3136 at 144.586 kb on + strand, within Atu3136 at 144.605 kb on + strand, within Atu3136 at 144.623 kb on - strand, within Atu3136 at 144.705 kb on + strand, within Atu3136 at 144.731 kb on + strand, within Atu3136 at 144.759 kb on + strand, within Atu3136 at 144.845 kb on - strand, within Atu3136 at 145.052 kb on + strand at 145.060 kb on - strand at 145.156 kb on - strand, within Atu3137 at 145.218 kb on - strand, within Atu3137 at 145.280 kb on - strand, within Atu3137 at 145.374 kb on + strand, within Atu3137 at 145.374 kb on + strand, within Atu3137 at 145.418 kb on + strand, within Atu3137 at 145.436 kb on + strand, within Atu3137 at 145.449 kb on - strand, within Atu3137 at 145.556 kb on + strand, within Atu3137 at 145.608 kb on + strand, within Atu3137 at 145.608 kb on + strand, within Atu3137 at 145.740 kb on - strand, within Atu3137 at 145.745 kb on - strand, within Atu3137 at 145.750 kb on - strand, within Atu3137 at 145.785 kb on - strand, within Atu3137 at 145.868 kb on - strand at 145.872 kb on - strand at 145.916 kb on - strand at 145.989 kb on + strand at 146.030 kb on + strand at 146.338 kb on + strand, within Atu3138 at 146.414 kb on - strand, within Atu3138 at 146.531 kb on + strand, within Atu3138 at 146.766 kb on + strand, within Atu3138 at 146.766 kb on + strand, within Atu3138 at 146.779 kb on - strand, within Atu3138 at 146.789 kb on - strand, within Atu3138 at 146.804 kb on - strand, within Atu3138 at 146.804 kb on - strand, within Atu3138 at 146.862 kb on + strand, within Atu3138 at 146.870 kb on - strand, within Atu3138 at 146.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benthi_leaf_C58C1OD0.075 remove 143,990 + Atu3135 0.68 +0.5 143,998 - Atu3135 0.69 +0.1 144,039 - Atu3135 0.72 +0.0 144,104 + Atu3135 0.77 +0.3 144,112 - Atu3135 0.78 -0.7 144,114 + Atu3135 0.78 -0.7 144,114 + Atu3135 0.78 -0.1 144,197 - Atu3135 0.85 -0.1 144,300 - +0.3 144,361 + -1.6 144,369 - -1.2 144,430 + +0.1 144,537 + Atu3136 0.27 +0.0 144,586 + Atu3136 0.37 -1.3 144,605 + Atu3136 0.40 -0.8 144,623 - Atu3136 0.44 -0.1 144,705 + Atu3136 0.60 -0.0 144,731 + Atu3136 0.65 -0.0 144,759 + Atu3136 0.70 -0.8 144,845 - Atu3136 0.86 -0.2 145,052 + -0.2 145,060 - -0.5 145,156 - Atu3137 0.17 -0.4 145,218 - Atu3137 0.24 +0.6 145,280 - Atu3137 0.30 +0.1 145,374 + Atu3137 0.40 -0.7 145,374 + Atu3137 0.40 +0.1 145,418 + Atu3137 0.44 -0.6 145,436 + Atu3137 0.46 -0.8 145,449 - Atu3137 0.47 +0.3 145,556 + Atu3137 0.58 +0.2 145,608 + Atu3137 0.64 +0.2 145,608 + Atu3137 0.64 -0.0 145,740 - Atu3137 0.77 +2.0 145,745 - Atu3137 0.78 -0.5 145,750 - Atu3137 0.78 +1.0 145,785 - Atu3137 0.82 -1.1 145,868 - -0.0 145,872 - -2.0 145,916 - +0.2 145,989 + +0.2 146,030 + -0.0 146,338 + Atu3138 0.26 +0.2 146,414 - Atu3138 0.35 -0.2 146,531 + Atu3138 0.48 -0.6 146,766 + Atu3138 0.75 +0.8 146,766 + Atu3138 0.75 -0.1 146,779 - Atu3138 0.76 +1.2 146,789 - Atu3138 0.78 -0.6 146,804 - Atu3138 0.79 +0.1 146,804 - Atu3138 0.79 -0.3 146,862 + Atu3138 0.86 +0.2 146,870 - Atu3138 0.87 +0.4 146,952 - +0.4
Or see this region's nucleotide sequence