Strain Fitness in Pseudomonas putida KT2440 around PP_1719

Experiment: Growth at 10C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1718 and PP_1719 are separated by 117 nucleotidesPP_1719 and PP_1720 are separated by 106 nucleotides PP_1718: PP_1718 - putative diguanylate phosphodiesterase containing EAL domain, at 1,917,142 to 1,918,224 _1718 PP_1719: PP_1719 - Tail-specific protease prc, at 1,918,342 to 1,920,456 _1719 PP_1720: PP_1720 - Alcohol dehydrogenase, zinc-containing, at 1,920,563 to 1,921,525 _1720 Position (kb) 1918 1919 1920 1921Strain fitness (log2 ratio) -3 -2 -1 0 1at 1917.524 kb on + strand, within PP_1718at 1917.525 kb on - strand, within PP_1718at 1917.525 kb on - strand, within PP_1718at 1917.633 kb on + strand, within PP_1718at 1917.633 kb on + strand, within PP_1718at 1917.634 kb on - strand, within PP_1718at 1917.634 kb on - strand, within PP_1718at 1917.918 kb on - strand, within PP_1718at 1918.056 kb on + strand, within PP_1718at 1918.056 kb on + strand, within PP_1718at 1918.057 kb on - strand, within PP_1718at 1918.087 kb on - strand, within PP_1718at 1918.123 kb on + strandat 1918.123 kb on + strandat 1918.128 kb on + strandat 1918.128 kb on + strandat 1918.129 kb on - strandat 1918.129 kb on - strandat 1918.170 kb on + strandat 1918.171 kb on - strandat 1918.171 kb on - strandat 1918.242 kb on + strandat 1918.243 kb on - strandat 1918.275 kb on - strandat 1918.275 kb on - strandat 1918.343 kb on + strandat 1918.343 kb on + strandat 1918.343 kb on + strandat 1918.344 kb on - strandat 1918.376 kb on + strandat 1918.376 kb on + strandat 1918.409 kb on + strandat 1918.409 kb on + strandat 1918.431 kb on + strandat 1918.431 kb on + strandat 1918.432 kb on - strandat 1918.637 kb on + strand, within PP_1719at 1918.638 kb on - strand, within PP_1719at 1918.967 kb on + strand, within PP_1719at 1918.967 kb on + strand, within PP_1719at 1918.967 kb on + strand, within PP_1719at 1918.968 kb on - strand, within PP_1719at 1919.045 kb on + strand, within PP_1719at 1919.045 kb on + strand, within PP_1719at 1919.045 kb on + strand, within PP_1719at 1919.046 kb on - strand, within PP_1719at 1919.261 kb on + strand, within PP_1719at 1919.261 kb on + strand, within PP_1719at 1919.262 kb on - strand, within PP_1719at 1919.262 kb on - strand, within PP_1719at 1919.282 kb on + strand, within PP_1719at 1919.301 kb on - strand, within PP_1719at 1919.333 kb on + strand, within PP_1719at 1919.334 kb on - strand, within PP_1719at 1919.334 kb on - strand, within PP_1719at 1919.334 kb on - strand, within PP_1719at 1919.414 kb on - strand, within PP_1719at 1919.440 kb on - strand, within PP_1719at 1919.735 kb on + strand, within PP_1719at 1919.735 kb on + strand, within PP_1719at 1919.736 kb on - strand, within PP_1719at 1919.753 kb on + strand, within PP_1719at 1919.754 kb on - strand, within PP_1719at 1919.754 kb on - strand, within PP_1719at 1919.754 kb on - strand, within PP_1719at 1919.777 kb on + strand, within PP_1719at 1919.778 kb on - strand, within PP_1719at 1919.778 kb on - strand, within PP_1719at 1919.778 kb on - strand, within PP_1719at 1919.778 kb on - strand, within PP_1719at 1920.080 kb on + strand, within PP_1719at 1920.081 kb on - strand, within PP_1719at 1920.176 kb on + strand, within PP_1719at 1920.177 kb on - strand, within PP_1719at 1920.177 kb on - strand, within PP_1719at 1920.206 kb on + strand, within PP_1719at 1920.207 kb on - strand, within PP_1719at 1920.207 kb on - strand, within PP_1719at 1920.207 kb on - strand, within PP_1719at 1920.207 kb on - strand, within PP_1719at 1920.207 kb on - strand, within PP_1719at 1920.207 kb on - strand, within PP_1719at 1920.207 kb on - strand, within PP_1719at 1920.207 kb on - strand, within PP_1719at 1920.215 kb on + strand, within PP_1719at 1920.215 kb on + strand, within PP_1719at 1920.216 kb on - strand, within PP_1719at 1920.216 kb on - strand, within PP_1719at 1920.216 kb on - strand, within PP_1719at 1920.257 kb on + strandat 1920.258 kb on - strandat 1920.456 kb on + strandat 1920.456 kb on + strandat 1920.456 kb on + strandat 1920.456 kb on + strandat 1920.456 kb on + strandat 1920.457 kb on - strandat 1920.457 kb on - strandat 1920.457 kb on - strandat 1920.457 kb on - strandat 1920.457 kb on - strandat 1920.460 kb on - strandat 1920.460 kb on - strandat 1920.460 kb on - strandat 1920.460 kb on - strandat 1920.502 kb on - strandat 1920.502 kb on - strandat 1920.502 kb on - strandat 1920.551 kb on + strandat 1920.551 kb on + strandat 1920.552 kb on - strandat 1920.728 kb on + strand, within PP_1720at 1920.728 kb on + strand, within PP_1720at 1920.728 kb on + strand, within PP_1720at 1920.728 kb on + strand, within PP_1720at 1920.729 kb on - strand, within PP_1720at 1920.729 kb on - strand, within PP_1720at 1920.729 kb on - strand, within PP_1720at 1920.729 kb on - strand, within PP_1720at 1920.729 kb on - strand, within PP_1720at 1920.861 kb on + strand, within PP_1720at 1920.862 kb on - strand, within PP_1720at 1920.917 kb on + strand, within PP_1720at 1920.917 kb on + strand, within PP_1720at 1920.917 kb on + strand, within PP_1720at 1920.917 kb on + strand, within PP_1720at 1920.918 kb on - strand, within PP_1720at 1920.918 kb on - strand, within PP_1720at 1920.918 kb on - strand, within PP_1720at 1920.918 kb on - strand, within PP_1720at 1921.082 kb on + strand, within PP_1720at 1921.083 kb on - strand, within PP_1720at 1921.116 kb on + strand, within PP_1720at 1921.117 kb on - strand, within PP_1720at 1921.117 kb on - strandat 1921.117 kb on - strand, within PP_1720at 1921.120 kb on + strand, within PP_1720at 1921.120 kb on + strand, within PP_1720at 1921.120 kb on + strand, within PP_1720at 1921.190 kb on + strand, within PP_1720at 1921.191 kb on - strand, within PP_1720at 1921.381 kb on - strand, within PP_1720at 1921.431 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 10C; with MOPS
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1,917,524 + PP_1718 0.35 -1.3
1,917,525 - PP_1718 0.35 -0.5
1,917,525 - PP_1718 0.35 +0.3
1,917,633 + PP_1718 0.45 -0.2
1,917,633 + PP_1718 0.45 -0.6
1,917,634 - PP_1718 0.45 -0.9
1,917,634 - PP_1718 0.45 -0.1
1,917,918 - PP_1718 0.72 +0.0
1,918,056 + PP_1718 0.84 -0.0
1,918,056 + PP_1718 0.84 +0.7
1,918,057 - PP_1718 0.84 +0.1
1,918,087 - PP_1718 0.87 -0.0
1,918,123 + +0.1
1,918,123 + -0.3
1,918,128 + +0.7
1,918,128 + +0.6
1,918,129 - -0.1
1,918,129 - -0.7
1,918,170 + +1.1
1,918,171 - -1.0
1,918,171 - -0.6
1,918,242 + -1.0
1,918,243 - -0.4
1,918,275 - -0.7
1,918,275 - -1.3
1,918,343 + -0.0
1,918,343 + -0.4
1,918,343 + +0.2
1,918,344 - -0.2
1,918,376 + -1.3
1,918,376 + -0.5
1,918,409 + -1.4
1,918,409 + -1.4
1,918,431 + -0.0
1,918,431 + +0.4
1,918,432 - -0.7
1,918,637 + PP_1719 0.14 -1.5
1,918,638 - PP_1719 0.14 -1.2
1,918,967 + PP_1719 0.30 -1.1
1,918,967 + PP_1719 0.30 -3.0
1,918,967 + PP_1719 0.30 -1.2
1,918,968 - PP_1719 0.30 -0.2
1,919,045 + PP_1719 0.33 +0.0
1,919,045 + PP_1719 0.33 +0.3
1,919,045 + PP_1719 0.33 -1.7
1,919,046 - PP_1719 0.33 -1.5
1,919,261 + PP_1719 0.43 -1.1
1,919,261 + PP_1719 0.43 -3.5
1,919,262 - PP_1719 0.43 -0.3
1,919,262 - PP_1719 0.43 -1.4
1,919,282 + PP_1719 0.44 -0.3
1,919,301 - PP_1719 0.45 -1.3
1,919,333 + PP_1719 0.47 +1.3
1,919,334 - PP_1719 0.47 -1.4
1,919,334 - PP_1719 0.47 -1.6
1,919,334 - PP_1719 0.47 -0.7
1,919,414 - PP_1719 0.51 -2.8
1,919,440 - PP_1719 0.52 -1.1
1,919,735 + PP_1719 0.66 -2.4
1,919,735 + PP_1719 0.66 -1.2
1,919,736 - PP_1719 0.66 +0.4
1,919,753 + PP_1719 0.67 +0.7
1,919,754 - PP_1719 0.67 -1.2
1,919,754 - PP_1719 0.67 -2.4
1,919,754 - PP_1719 0.67 -2.7
1,919,777 + PP_1719 0.68 +0.4
1,919,778 - PP_1719 0.68 -1.3
1,919,778 - PP_1719 0.68 +1.3
1,919,778 - PP_1719 0.68 -0.0
1,919,778 - PP_1719 0.68 -0.2
1,920,080 + PP_1719 0.82 -2.7
1,920,081 - PP_1719 0.82 +0.3
1,920,176 + PP_1719 0.87 -1.3
1,920,177 - PP_1719 0.87 -1.3
1,920,177 - PP_1719 0.87 -0.5
1,920,206 + PP_1719 0.88 -0.8
1,920,207 - PP_1719 0.88 -0.7
1,920,207 - PP_1719 0.88 -1.4
1,920,207 - PP_1719 0.88 -0.3
1,920,207 - PP_1719 0.88 -1.8
1,920,207 - PP_1719 0.88 -2.4
1,920,207 - PP_1719 0.88 -0.9
1,920,207 - PP_1719 0.88 -0.8
1,920,207 - PP_1719 0.88 -0.6
1,920,215 + PP_1719 0.89 -1.4
1,920,215 + PP_1719 0.89 -1.0
1,920,216 - PP_1719 0.89 -0.1
1,920,216 - PP_1719 0.89 -2.5
1,920,216 - PP_1719 0.89 +0.3
1,920,257 + -1.1
1,920,258 - -0.1
1,920,456 + +0.3
1,920,456 + -0.5
1,920,456 + +0.5
1,920,456 + +0.1
1,920,456 + +0.4
1,920,457 - +0.9
1,920,457 - -0.8
1,920,457 - -0.3
1,920,457 - -0.6
1,920,457 - +0.6
1,920,460 - -0.0
1,920,460 - -0.1
1,920,460 - -0.3
1,920,460 - -0.7
1,920,502 - +0.5
1,920,502 - -0.8
1,920,502 - -0.0
1,920,551 + +0.9
1,920,551 + -0.4
1,920,552 - -2.5
1,920,728 + PP_1720 0.17 -0.5
1,920,728 + PP_1720 0.17 -1.1
1,920,728 + PP_1720 0.17 -0.4
1,920,728 + PP_1720 0.17 +1.5
1,920,729 - PP_1720 0.17 +0.7
1,920,729 - PP_1720 0.17 -0.1
1,920,729 - PP_1720 0.17 -0.5
1,920,729 - PP_1720 0.17 -0.2
1,920,729 - PP_1720 0.17 +1.2
1,920,861 + PP_1720 0.31 +0.5
1,920,862 - PP_1720 0.31 +0.6
1,920,917 + PP_1720 0.37 +0.0
1,920,917 + PP_1720 0.37 -0.1
1,920,917 + PP_1720 0.37 +0.2
1,920,917 + PP_1720 0.37 +0.3
1,920,918 - PP_1720 0.37 +0.5
1,920,918 - PP_1720 0.37 -0.7
1,920,918 - PP_1720 0.37 -0.3
1,920,918 - PP_1720 0.37 -0.2
1,921,082 + PP_1720 0.54 -0.6
1,921,083 - PP_1720 0.54 +0.3
1,921,116 + PP_1720 0.57 +0.5
1,921,117 - PP_1720 0.58 +0.2
1,921,117 - -0.6
1,921,117 - PP_1720 0.58 +0.4
1,921,120 + PP_1720 0.58 -1.8
1,921,120 + PP_1720 0.58 +0.1
1,921,120 + PP_1720 0.58 +0.5
1,921,190 + PP_1720 0.65 +1.6
1,921,191 - PP_1720 0.65 +0.9
1,921,381 - PP_1720 0.85 +0.8
1,921,431 - -2.3

Or see this region's nucleotide sequence