Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04205 and PS417_04210 are separated by 11 nucleotides PS417_04210 and PS417_04215 are separated by 189 nucleotides
PS417_04205: PS417_04205 - D-galacturonate transporter (MFS superfamily) <small>(from data)</small>, at 942,350 to 943,714
_04205
PS417_04210: PS417_04210 - Galactarate dehydratase (EC 4.2.1.42) <small>(from data)</small>, at 943,726 to 945,279
_04210
PS417_04215: PS417_04215 - malate transporter, at 945,469 to 946,410
_04215
Position (kb) 943
944
945
946 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 942.791 kb on - strand, within PS417_04205 at 942.803 kb on + strand, within PS417_04205 at 942.848 kb on + strand, within PS417_04205 at 943.055 kb on + strand, within PS417_04205 at 943.055 kb on + strand, within PS417_04205 at 943.055 kb on + strand, within PS417_04205 at 943.056 kb on - strand, within PS417_04205 at 943.056 kb on - strand, within PS417_04205 at 943.098 kb on - strand, within PS417_04205 at 943.142 kb on - strand, within PS417_04205 at 943.157 kb on + strand, within PS417_04205 at 943.358 kb on + strand, within PS417_04205 at 943.541 kb on + strand, within PS417_04205 at 943.542 kb on - strand, within PS417_04205 at 943.542 kb on - strand, within PS417_04205 at 943.620 kb on - strand at 943.650 kb on + strand at 943.651 kb on - strand at 943.651 kb on - strand at 943.651 kb on - strand at 943.651 kb on - strand at 943.651 kb on - strand at 943.651 kb on - strand at 943.939 kb on + strand, within PS417_04210 at 944.282 kb on - strand, within PS417_04210 at 944.282 kb on - strand, within PS417_04210 at 944.282 kb on - strand, within PS417_04210 at 944.282 kb on - strand, within PS417_04210 at 944.696 kb on - strand, within PS417_04210 at 944.761 kb on + strand, within PS417_04210 at 944.762 kb on - strand, within PS417_04210 at 945.185 kb on - strand at 945.401 kb on - strand at 945.434 kb on - strand at 945.441 kb on + strand at 945.682 kb on + strand, within PS417_04215 at 945.766 kb on + strand, within PS417_04215 at 945.766 kb on + strand, within PS417_04215 at 945.766 kb on + strand, within PS417_04215 at 945.767 kb on - strand, within PS417_04215 at 945.767 kb on - strand, within PS417_04215 at 945.767 kb on - strand, within PS417_04215 at 945.767 kb on - strand, within PS417_04215 at 945.767 kb on - strand, within PS417_04215 at 945.767 kb on - strand, within PS417_04215 at 945.768 kb on + strand, within PS417_04215 at 945.829 kb on + strand, within PS417_04215 at 945.886 kb on + strand, within PS417_04215 at 945.887 kb on - strand, within PS417_04215 at 945.920 kb on - strand, within PS417_04215 at 945.920 kb on - strand, within PS417_04215 at 946.252 kb on + strand, within PS417_04215 at 946.252 kb on + strand, within PS417_04215 at 946.253 kb on - strand, within PS417_04215
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 942,791 - PS417_04205 0.32 -0.2 942,803 + PS417_04205 0.33 -0.6 942,848 + PS417_04205 0.36 -1.3 943,055 + PS417_04205 0.52 +1.0 943,055 + PS417_04205 0.52 -0.5 943,055 + PS417_04205 0.52 +0.7 943,056 - PS417_04205 0.52 +0.3 943,056 - PS417_04205 0.52 -2.2 943,098 - PS417_04205 0.55 -0.1 943,142 - PS417_04205 0.58 -0.3 943,157 + PS417_04205 0.59 -5.1 943,358 + PS417_04205 0.74 -1.9 943,541 + PS417_04205 0.87 -1.1 943,542 - PS417_04205 0.87 +0.9 943,542 - PS417_04205 0.87 +1.3 943,620 - +0.1 943,650 + -0.3 943,651 - -3.1 943,651 - +0.5 943,651 - -0.3 943,651 - +0.2 943,651 - -2.6 943,651 - +0.4 943,939 + PS417_04210 0.14 +0.9 944,282 - PS417_04210 0.36 +0.2 944,282 - PS417_04210 0.36 -1.2 944,282 - PS417_04210 0.36 +1.0 944,282 - PS417_04210 0.36 +2.3 944,696 - PS417_04210 0.62 -0.4 944,761 + PS417_04210 0.67 +1.7 944,762 - PS417_04210 0.67 +1.4 945,185 - -3.0 945,401 - -0.6 945,434 - +1.0 945,441 + +0.8 945,682 + PS417_04215 0.23 +1.3 945,766 + PS417_04215 0.32 -0.2 945,766 + PS417_04215 0.32 -1.4 945,766 + PS417_04215 0.32 -3.2 945,767 - PS417_04215 0.32 +0.7 945,767 - PS417_04215 0.32 +0.7 945,767 - PS417_04215 0.32 +0.2 945,767 - PS417_04215 0.32 -0.5 945,767 - PS417_04215 0.32 -1.4 945,767 - PS417_04215 0.32 +0.1 945,768 + PS417_04215 0.32 +0.5 945,829 + PS417_04215 0.38 +1.8 945,886 + PS417_04215 0.44 -2.3 945,887 - PS417_04215 0.44 +0.2 945,920 - PS417_04215 0.48 -2.6 945,920 - PS417_04215 0.48 -0.4 946,252 + PS417_04215 0.83 +1.6 946,252 + PS417_04215 0.83 +0.9 946,253 - PS417_04215 0.83 -2.3
Or see this region's nucleotide sequence