Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04010 and PS417_04015 overlap by 4 nucleotides PS417_04015 and PS417_04020 are separated by 11 nucleotides PS417_04020 and PS417_04025 are separated by 20 nucleotides
PS417_04010: PS417_04010 - glycine/betaine ABC transporter ATP-binding protein, at 900,994 to 902,151
_04010
PS417_04015: PS417_04015 - choline ABC transporter permease, at 902,148 to 902,801
_04015
PS417_04020: PS417_04020 - glycine/betaine ABC transporter substrate-binding protein, at 902,813 to 903,709
_04020
PS417_04025: PS417_04025 - glycine/betaine ABC transporter permease, at 903,730 to 904,446
_04025
Position (kb) 902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 901.148 kb on + strand, within PS417_04010 at 901.148 kb on + strand, within PS417_04010 at 901.148 kb on + strand, within PS417_04010 at 901.149 kb on - strand, within PS417_04010 at 901.262 kb on + strand, within PS417_04010 at 901.262 kb on + strand, within PS417_04010 at 901.262 kb on + strand, within PS417_04010 at 901.263 kb on - strand, within PS417_04010 at 901.301 kb on + strand, within PS417_04010 at 901.302 kb on - strand, within PS417_04010 at 901.420 kb on - strand, within PS417_04010 at 901.441 kb on - strand, within PS417_04010 at 902.080 kb on + strand at 902.080 kb on + strand at 902.081 kb on - strand at 902.081 kb on - strand at 902.081 kb on - strand at 902.285 kb on + strand, within PS417_04015 at 902.285 kb on + strand, within PS417_04015 at 902.285 kb on + strand, within PS417_04015 at 902.290 kb on - strand, within PS417_04015 at 902.485 kb on + strand, within PS417_04015 at 902.486 kb on - strand, within PS417_04015 at 902.486 kb on - strand, within PS417_04015 at 902.814 kb on + strand at 903.015 kb on + strand, within PS417_04020 at 903.015 kb on + strand, within PS417_04020 at 903.016 kb on - strand, within PS417_04020 at 903.075 kb on + strand, within PS417_04020 at 903.076 kb on - strand, within PS417_04020 at 903.171 kb on + strand, within PS417_04020 at 903.171 kb on + strand, within PS417_04020 at 903.171 kb on + strand, within PS417_04020 at 903.172 kb on - strand, within PS417_04020 at 903.172 kb on - strand, within PS417_04020 at 903.336 kb on + strand, within PS417_04020 at 903.336 kb on + strand, within PS417_04020 at 903.337 kb on - strand, within PS417_04020 at 903.408 kb on + strand, within PS417_04020 at 903.448 kb on - strand, within PS417_04020 at 903.574 kb on - strand, within PS417_04020 at 903.731 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 901,148 + PS417_04010 0.13 -0.4 901,148 + PS417_04010 0.13 -1.5 901,148 + PS417_04010 0.13 -1.9 901,149 - PS417_04010 0.13 -0.1 901,262 + PS417_04010 0.23 -1.0 901,262 + PS417_04010 0.23 -1.0 901,262 + PS417_04010 0.23 -2.2 901,263 - PS417_04010 0.23 -1.0 901,301 + PS417_04010 0.27 -0.4 901,302 - PS417_04010 0.27 -0.1 901,420 - PS417_04010 0.37 -0.8 901,441 - PS417_04010 0.39 -1.4 902,080 + -0.2 902,080 + -0.5 902,081 - -3.0 902,081 - -0.8 902,081 - +1.4 902,285 + PS417_04015 0.21 -1.2 902,285 + PS417_04015 0.21 +0.7 902,285 + PS417_04015 0.21 +4.7 902,290 - PS417_04015 0.22 +0.6 902,485 + PS417_04015 0.52 -0.3 902,486 - PS417_04015 0.52 -1.4 902,486 - PS417_04015 0.52 -0.6 902,814 + -0.4 903,015 + PS417_04020 0.23 -0.6 903,015 + PS417_04020 0.23 -0.2 903,016 - PS417_04020 0.23 -2.4 903,075 + PS417_04020 0.29 -0.1 903,076 - PS417_04020 0.29 +0.4 903,171 + PS417_04020 0.40 +2.1 903,171 + PS417_04020 0.40 +2.0 903,171 + PS417_04020 0.40 +0.1 903,172 - PS417_04020 0.40 +1.0 903,172 - PS417_04020 0.40 -0.8 903,336 + PS417_04020 0.58 -0.7 903,336 + PS417_04020 0.58 -1.7 903,337 - PS417_04020 0.58 +3.0 903,408 + PS417_04020 0.66 -1.3 903,448 - PS417_04020 0.71 +0.2 903,574 - PS417_04020 0.85 -0.2 903,731 + -0.6
Or see this region's nucleotide sequence