Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03370 and PS417_03375 are separated by 225 nucleotides PS417_03375 and PS417_03380 are separated by 38 nucleotides PS417_03380 and PS417_03385 are separated by 31 nucleotides PS417_03385 and PS417_03390 are separated by 174 nucleotides
PS417_03370: PS417_03370 - porin, at 775,191 to 776,510
_03370
PS417_03375: PS417_03375 - hypothetical protein, at 776,736 to 777,068
_03375
PS417_03380: PS417_03380 - hypothetical protein, at 777,107 to 777,544
_03380
PS417_03385: PS417_03385 - flavin reductase, at 777,576 to 778,163
_03385
PS417_03390: PS417_03390 - AraC family transcriptional regulator, at 778,338 to 779,159
_03390
Position (kb) 777
778 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 776.140 kb on + strand, within PS417_03370 at 776.140 kb on + strand, within PS417_03370 at 776.141 kb on - strand, within PS417_03370 at 776.141 kb on - strand, within PS417_03370 at 776.141 kb on - strand, within PS417_03370 at 776.494 kb on + strand at 776.494 kb on + strand at 776.626 kb on - strand at 776.662 kb on + strand at 776.663 kb on - strand at 776.817 kb on - strand, within PS417_03375 at 776.817 kb on - strand, within PS417_03375 at 776.817 kb on - strand, within PS417_03375 at 776.840 kb on + strand, within PS417_03375 at 776.994 kb on + strand, within PS417_03375 at 776.995 kb on - strand, within PS417_03375 at 776.995 kb on - strand, within PS417_03375 at 777.020 kb on + strand, within PS417_03375 at 777.031 kb on - strand, within PS417_03375 at 777.252 kb on + strand, within PS417_03380 at 777.454 kb on - strand, within PS417_03380 at 777.542 kb on + strand at 777.988 kb on - strand, within PS417_03385 at 777.988 kb on - strand, within PS417_03385 at 778.393 kb on + strand at 778.394 kb on - strand at 778.519 kb on + strand, within PS417_03390 at 778.520 kb on - strand, within PS417_03390
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 776,140 + PS417_03370 0.72 -1.1 776,140 + PS417_03370 0.72 -0.7 776,141 - PS417_03370 0.72 -2.0 776,141 - PS417_03370 0.72 +0.8 776,141 - PS417_03370 0.72 +0.1 776,494 + +0.7 776,494 + +1.0 776,626 - +0.2 776,662 + -0.5 776,663 - +0.3 776,817 - PS417_03375 0.24 -0.1 776,817 - PS417_03375 0.24 +1.8 776,817 - PS417_03375 0.24 +0.1 776,840 + PS417_03375 0.31 -3.4 776,994 + PS417_03375 0.77 -0.7 776,995 - PS417_03375 0.78 +1.0 776,995 - PS417_03375 0.78 -1.5 777,020 + PS417_03375 0.85 -0.5 777,031 - PS417_03375 0.89 -0.5 777,252 + PS417_03380 0.33 -2.9 777,454 - PS417_03380 0.79 -2.8 777,542 + +0.3 777,988 - PS417_03385 0.70 -0.0 777,988 - PS417_03385 0.70 +1.5 778,393 + -2.1 778,394 - -0.8 778,519 + PS417_03390 0.22 -1.9 778,520 - PS417_03390 0.22 +1.8
Or see this region's nucleotide sequence